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NC_028924.1__YP_009209723.1__AVT43_gp63__00063
Bact-VirNC_028924.1__YP_009209723.1__AVT43_gp63__00063
Identity
- Accession:
- NC_028924 ↗
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Taxonomy
TaxID: 1647386
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-44
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3crvA02 | 1.10.275.30 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.61 | 48.0 | 3.56e-01 | 86.0% | 85.2% |
| 1hi8A02 | 1.10.490.60 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phage p2 RNA dependent RNA polymerase domain | 0.61 | 42.0 | 2.97e-01 | 79.1% | 22.2% |
| 6dnwA01 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.51 | 37.0 | 2.68e-01 | 79.1% | 31.7% |
| 3b4yA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.50 | 39.0 | 2.35e-01 | 90.7% | 11.4% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082812 | 386.1.1.419 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF2116 | 0.80 | 59.0 | 4.78e-01 | 76.7% | 45.9% |
| 3893146 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.63 | 55.0 | 4.01e-01 | 100.0% | 41.7% |
| 3493749 | 376.1.3.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H | 0.62 | 51.0 | 3.78e-01 | 95.3% | 60.0% |
| 5010330 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.57 | 48.0 | 2.96e-01 | 100.0% | 50.0% |
| 3938223 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.56 | 42.0 | 3.89e-01 | 95.3% | 70.8% |
| 4155736 | 375.1.1.6 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L40e | 0.55 | 38.0 | 3.53e-01 | 74.4% | 55.9% |
| 3416323 | 376.1.3.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H | 0.55 | 41.0 | 3.32e-01 | 93.0% | 64.8% |
| 3451911 | 11.2.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 | 0.55 | 47.0 | 3.08e-01 | 100.0% | 96.4% |
| 3302165 | 386.1.1.209 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › WAC_Acf1_DNA_bd | 0.53 | 45.0 | 3.74e-01 | 100.0% | 53.8% |
| 4124290 | 375.1.1.6 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L40e | 0.52 | 37.0 | 3.56e-01 | 83.7% | 67.3% |
| 3960989 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.51 | 45.0 | 2.67e-01 | 100.0% | 92.2% |
| 3551331 | 633.29.1.8 ↗ | alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 › WAC_Acf1_DNA_bd | 0.50 | 41.0 | 3.48e-01 | 100.0% | 53.8% |