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NC_028929.1__YP_009210464.1__AVV21_gp16__00016
Bact-VirNC_028929.1__YP_009210464.1__AVV21_gp16__00016
Identity
- Accession:
- NC_028929 ↗
- Kingdom:
- phage
Quality
53.9
mean pLDDT
Taxonomy
TaxID: 1591073
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-75
D2
medium
residues 371-547
Domain cluster:
rep: ON529866.1__UTC30100.1__MAINES_00610__00061__D285-468
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20155.5 best | TMP_3 | 76.7 | 2.80e-21 | 100.0% | 90.6% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m1tA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 48.0 | 4.14e-01 | 97.7% | 84.8% |
| 2j1oA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 39.0 | 3.51e-01 | 80.8% | 94.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164789 | 159.1.2.5 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 | 0.87 | 77.0 | 8.04e-01 | 100.0% | 99.4% |
| 3963765 | 159.1.2.5 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 | 0.77 | 70.0 | 6.89e-01 | 100.0% | 91.1% |
| 4032310 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.74 | 54.0 | 5.82e-01 | 100.0% | 87.3% |
| 3941716 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.74 | 47.0 | 5.44e-01 | 92.1% | 86.9% |
| 2142445 | 5049.1.1.1 ↗ | alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Ammonium transporter › Ammonium_transp | 0.60 | 48.0 | 3.64e-01 | 83.6% | 91.1% |
| 4953656 | 5054.1.1.68 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport | 0.58 | 26.0 | 2.78e-01 | 88.7% | 43.1% |
| 3629726 | 5067.1.1.5 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing | 0.56 | 44.0 | 3.03e-01 | 82.5% | 83.4% |
D3
medium
residues 1121-1232
Domain cluster:
rep: KX833905.1__APC44668.1__X__00042__D1012-1106
D4
medium
residues 1406-1479