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NC_028930.1__YP_009210544.1__TRIPP_24__00024
Bact-VirNC_028930.1__YP_009210544.1__TRIPP_24__00024
Identity
- Accession:
- NC_028930 ↗
- Kingdom:
- phage
Quality
83.1
mean pLDDT
Taxonomy
TaxID: 1718161
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-85
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13340.12 best | DUF4096 | 106.9 | 7.10e-31 | 94.8% | 96.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 45.0 | 4.85e-01 | 89.6% | 90.5% |
| 3tsaA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 38.0 | 2.94e-01 | 100.0% | 27.1% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 37.0 | 3.89e-01 | 71.4% | 86.8% |
| 1t0fA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.82e-01 | 81.8% | 75.8% |
| 1w23A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 37.0 | 3.39e-01 | 98.7% | 54.4% |
| 6z01B01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.53 | 41.0 | 4.09e-01 | 85.7% | 98.7% |
| 1e29A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.52 | 37.0 | 3.18e-01 | 76.6% | 95.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002528 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.95 | 88.0 | 5.81e-01 | 100.0% | 28.8% |
| 3984673 | 101.1.1.99 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4096 | 0.93 | 89.0 | 8.58e-01 | 100.0% | 91.8% |
| 4664482 | 101.1.1.99 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4096 | 0.90 | 82.0 | 8.35e-01 | 96.1% | 97.3% |
| 4950546 | 101.1.6.41 ↗ | alpha arrays › HTH › HTH › TrpR › DUF4096 | 0.90 | 83.0 | 7.84e-01 | 100.0% | 84.4% |
| 4949365 | 101.1.1.99 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4096 | 0.88 | 81.0 | 7.63e-01 | 100.0% | 84.4% |
| 4129105 | 101.1.1.99 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4096 | 0.87 | 81.0 | 7.66e-01 | 100.0% | 91.1% |
| 3954386 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.80 | 73.0 | 6.34e-01 | 100.0% | 83.5% |
| 3404418 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.62 | 43.0 | 4.46e-01 | 71.4% | 77.1% |
| 3777065 | 101.1.1.89 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 | 0.62 | 46.0 | 4.92e-01 | 80.5% | 100.0% |
| 3226202 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.59 | 41.0 | 3.79e-01 | 72.7% | 91.0% |
| 3886591 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.56 | 39.0 | 3.95e-01 | 75.3% | 78.8% |
| None | — | 0.56 | 40.0 | 3.73e-01 | 77.9% | 61.0% | |
| 3410877 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 38.0 | 3.93e-01 | 71.4% | 78.6% |
| 3991598 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.55 | 40.0 | 4.01e-01 | 80.5% | 85.0% |
| 5006130 | 7518.1.1.6 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › DacZ_A | 0.55 | 37.0 | 3.36e-01 | 71.4% | 70.9% |
| 3818733 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.53 | 38.0 | 3.09e-01 | 74.0% | 41.4% |
| 3894712 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.53 | 38.0 | 3.90e-01 | 77.9% | 85.3% |
| 3529995 | 226.1.1.4 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 | 0.53 | 41.0 | 3.58e-01 | 83.1% | 71.3% |
| 4042887 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 4.31e-01 | 87.0% | 100.0% |