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NC_028930.1__YP_009210557.1__TRIPP_37__00037

Bact-Vir

NC_028930.1__YP_009210557.1__TRIPP_37__00037

Identity

Accession:
NC_028930 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-97
PDB
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 54.0 5.37e-01 100.0% 76.4%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 53.0 5.20e-01 100.0% 76.7%
3l4gC01 3.30.1370.240 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.68 55.0 4.81e-01 89.7% 59.0%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 42.0 3.86e-01 70.6% 81.9%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 4.21e-01 80.9% 66.2%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.61 31.0 3.40e-01 100.0% 58.2%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 48.0 4.18e-01 100.0% 55.6%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.60 38.0 3.27e-01 82.4% 38.7%
6f7bA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.60 50.0 3.31e-01 92.6% 79.8%
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 43.0 3.14e-01 83.8% 27.7%
2w5yA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.59 47.0 3.68e-01 89.7% 84.5%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.59 40.0 2.92e-01 72.1% 85.9%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 45.0 3.87e-01 88.2% 57.9%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.86e-01 89.7% 56.0%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.57 41.0 3.58e-01 98.5% 49.1%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.79e-01 86.8% 58.9%
4g08A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 46.0 4.63e-01 100.0% 88.6%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 44.0 4.54e-01 98.5% 93.8%
2axyA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 49.0 4.82e-01 100.0% 94.4%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 46.0 4.22e-01 100.0% 67.4%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 36.0 3.59e-01 83.8% 60.0%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.56 40.0 4.01e-01 100.0% 75.7%
2q14A02 1.20.1250.30 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 42.0 3.19e-01 82.4% 34.3%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.56 35.0 3.51e-01 82.4% 60.6%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 48.0 4.67e-01 100.0% 92.0%
4c8yA01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 47.0 4.09e-01 97.1% 69.5%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 4.28e-01 98.5% 83.8%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.81e-01 89.7% 63.8%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.54 48.0 3.17e-01 98.5% 65.6%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.58e-01 86.8% 62.3%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.88e-01 92.6% 67.6%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 45.0 4.29e-01 98.5% 89.4%
1ti2B01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.48e-01 89.7% 69.2%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 44.0 4.18e-01 100.0% 83.1%
2qndA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 45.0 4.34e-01 100.0% 96.2%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.83e-01 97.1% 61.5%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 42.0 4.16e-01 98.5% 84.0%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 43.0 3.73e-01 91.2% 90.1%
2dgrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 44.0 4.49e-01 98.5% 98.5%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 4.16e-01 80.9% 96.5%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.51e-01 83.8% 77.8%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.84e-01 88.2% 75.3%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.52 44.0 3.50e-01 100.0% 47.1%
3u1kB04 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 41.0 4.11e-01 97.1% 87.5%
3cx5B02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 42.0 3.53e-01 98.5% 80.7%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.51 43.0 3.71e-01 100.0% 74.6%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.51 43.0 4.01e-01 100.0% 83.3%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 43.0 3.62e-01 98.5% 75.6%
2h00B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 2.79e-01 83.8% 76.7%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.51 43.0 3.97e-01 100.0% 76.8%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.51 41.0 2.72e-01 100.0% 74.5%
1xmbA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.80e-01 100.0% 79.2%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.15e-01 80.9% 55.6%
1lq9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 42.0 3.71e-01 100.0% 71.4%
2cfaA01 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.50 43.0 3.46e-01 100.0% 71.5%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.18e-01 83.8% 74.2%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.46e-01 88.2% 58.1%
4oc8A01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.50 43.0 3.10e-01 100.0% 54.0%
2g47A03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 42.0 3.04e-01 100.0% 79.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3518030 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.94 82.0 8.19e-01 92.6% 90.0%
3984393 101.1.9.88 alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.92 86.0 7.17e-01 100.0% 67.3%
3986225 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.82 74.0 5.13e-01 98.5% 36.1%
3506247 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.80 71.0 5.06e-01 98.5% 37.9%
4033119 101.1.9.63 alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.69 57.0 5.00e-01 100.0% 61.0%
4937824 328.8.1.1 a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.64 57.0 4.42e-01 98.5% 95.9%
3181300 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 3.61e-01 80.9% 47.9%
3482620 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.60 41.0 2.81e-01 70.6% 69.2%
4940054 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.28e-01 88.2% 65.3%
5077919 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.59 47.0 4.16e-01 88.2% 61.0%
5011597 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.59 44.0 3.99e-01 83.8% 58.6%
4946524 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 3.86e-01 83.8% 52.7%
3470049 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.58 52.0 2.95e-01 100.0% 11.6%
4025594 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.58 47.0 4.75e-01 100.0% 91.4%
3968152 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.58 44.0 4.32e-01 100.0% 76.0%
5029853 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 43.0 3.64e-01 80.9% 54.2%
3479755 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 51.0 3.08e-01 100.0% 17.9%
5025451 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.58 45.0 3.94e-01 88.2% 55.5%
3648333 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.58 44.0 3.91e-01 88.2% 57.0%
3269923 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.58 44.0 3.06e-01 82.4% 58.3%
5051882 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.57 44.0 3.75e-01 89.7% 51.8%
4969221 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.56 46.0 2.95e-01 88.2% 20.3%
3407270 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.56 47.0 4.66e-01 100.0% 90.7%
3787183 309.1.1.8 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M 0.56 43.0 2.94e-01 83.8% 80.8%
3524302 327.11.2.52 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF29969 0.56 44.0 4.48e-01 97.1% 95.4%
1211839 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.55 46.0 4.17e-01 100.0% 66.7%
4945186 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.34e-01 80.9% 41.5%
5076142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.99e-01 88.2% 65.3%
4928075 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 4.00e-01 83.8% 75.0%
4947503 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.35e-01 88.2% 43.1%
4926994 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.55 41.0 3.67e-01 83.8% 57.7%
3538501 101.1.2.161 alpha arrays › HTH › HTH › winged helix domain › NOD2_WH 0.55 38.0 3.68e-01 73.5% 65.3%
4961841 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.54 46.0 3.87e-01 100.0% 60.8%
5010964 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.54 42.0 3.80e-01 88.2% 61.0%
5077595 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 3.46e-01 83.8% 50.0%
4959456 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 46.0 3.51e-01 98.5% 49.4%
3944118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.81e-01 85.3% 67.8%
3877940 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 45.0 4.52e-01 100.0% 100.0%
4130677 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.53 42.0 4.26e-01 98.5% 90.0%
3613321 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 39.0 2.38e-01 80.9% 24.0%
5009929 304.51.1.7 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.53 44.0 3.67e-01 100.0% 85.0%
3956508 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.53 44.0 4.28e-01 98.5% 85.0%
4991742 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 46.0 3.80e-01 100.0% 76.9%
4791706 304.126.1.4 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N 0.53 39.0 3.83e-01 89.7% 74.3%
3690788 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.53 42.0 2.86e-01 89.7% 59.3%
4545114 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.53 44.0 4.24e-01 98.5% 87.5%
3740262 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.26e-01 83.8% 68.5%
3740693 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.52 43.0 2.53e-01 94.1% 25.4%
3847407 327.11.2.23 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_8 0.52 43.0 4.07e-01 98.5% 78.8%
3701745 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.31e-01 94.1% 47.5%
3724091 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.51 45.0 3.05e-01 98.5% 52.2%
3702239 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 39.0 3.14e-01 83.8% 70.4%
5008981 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.50 40.0 2.64e-01 100.0% 17.1%
4372378 306.3.1.4 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › PFF1_C 0.50 41.0 3.95e-01 100.0% 78.8%
4961487 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 43.0 3.69e-01 98.5% 64.3%
4978596 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 39.0 3.32e-01 89.7% 61.6%
3281159 4107.1.1.1 alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.50 38.0 2.89e-01 82.4% 41.8%