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NC_028932.1__YP_009210743.1__SEA_SERENITY_59__00057
Bact-VirNC_028932.1__YP_009210743.1__SEA_SERENITY_59__00057
Identity
- Accession:
- NC_028932 ↗
- Kingdom:
- phage
Quality
69.8
mean pLDDT
Taxonomy
TaxID: 1701853
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-68
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 56.0 | 5.04e-01 | 96.7% | 82.1% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.65 | 54.0 | 4.47e-01 | 91.8% | 98.1% |
| 1fx7B03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.62 | 52.0 | 4.82e-01 | 96.7% | 100.0% |
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 45.0 | 4.86e-01 | 88.5% | 100.0% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 49.0 | 5.08e-01 | 96.7% | 100.0% |
| 3rmhB00 | 2.40.50.810 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 41.0 | 3.25e-01 | 72.1% | 46.6% |
| 1nycA00 | 2.40.310.10 | Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors | 0.60 | 46.0 | 3.87e-01 | 85.2% | 80.2% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 48.0 | 4.97e-01 | 90.2% | 96.5% |
| 4lqzA00 | 2.40.128.570 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 | 0.58 | 47.0 | 3.70e-01 | 91.8% | 98.5% |
| 1v5uA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 45.0 | 3.67e-01 | 86.9% | 83.8% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 44.0 | 3.64e-01 | 86.9% | 85.5% |
| 2fjlA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 42.0 | 3.28e-01 | 85.2% | 89.3% |
| 2o6cA00 | 2.60.40.2480 | Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type | 0.55 | 40.0 | 3.10e-01 | 82.0% | 94.9% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.55 | 42.0 | 3.63e-01 | 90.2% | 58.7% |
| 3feoB02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 43.0 | 3.99e-01 | 91.8% | 84.3% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 40.0 | 2.61e-01 | 85.2% | 89.1% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.54 | 44.0 | 3.68e-01 | 93.4% | 94.7% |
| 4g7nA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 42.0 | 3.57e-01 | 95.1% | 89.3% |
| 2fhxA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 41.0 | 2.85e-01 | 90.2% | 91.8% |
| 3gd0A02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.53 | 42.0 | 3.59e-01 | 95.1% | 79.5% |
| 3gvzA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.52 | 37.0 | 2.52e-01 | 78.7% | 27.0% |
| 2lmeA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.52 | 38.0 | 3.23e-01 | 80.3% | 55.2% |
| 4nsxA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 42.0 | 2.75e-01 | 95.1% | 57.2% |
| 6n9aB02 | 3.30.420.200 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.51 | 37.0 | 3.63e-01 | 78.7% | 91.3% |
| 4jg9A00 | 2.60.40.3830 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 39.0 | 3.15e-01 | 91.8% | 83.5% |
| 5yjwA00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.50 | 40.0 | 2.48e-01 | 95.1% | 88.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081091 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 55.0 | 4.82e-01 | 96.7% | 95.8% |
| 3401697 | 4357.1.1.4 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_3 | 0.64 | 49.0 | 4.41e-01 | 83.6% | 74.1% |
| 3267771 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.61 | 42.0 | 3.51e-01 | 78.7% | 40.0% |
| 3443169 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.60 | 49.0 | 3.54e-01 | 90.2% | 61.2% |
| 3629316 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 49.0 | 4.30e-01 | 96.7% | 89.0% |
| 3663391 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.59 | 48.0 | 2.92e-01 | 95.1% | 90.3% |
| 3301990 | 5.1.2.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 | 0.59 | 41.0 | 3.39e-01 | 75.4% | 95.8% |
| 3284393 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.59 | 47.0 | 3.77e-01 | 100.0% | 43.4% |
| 3421657 | 5.1.10.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF295 | 0.57 | 38.0 | 3.49e-01 | 70.5% | 49.4% |
| 5059043 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 42.0 | 2.64e-01 | 80.3% | 32.2% |
| 3898844 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.57 | 48.0 | 3.45e-01 | 100.0% | 73.5% |
| 3574513 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.56 | 44.0 | 3.12e-01 | 86.9% | 49.2% |
| 4964626 | 101.1.2.931 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7528 | 0.55 | 42.0 | 3.35e-01 | 83.6% | 62.3% |
| 3722808 | 192.7.1.40 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › APH | 0.55 | 42.0 | 3.33e-01 | 86.9% | 62.9% |
| 3716988 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.54 | 41.0 | 2.67e-01 | 85.2% | 84.2% |
| 3302833 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.54 | 44.0 | 2.91e-01 | 95.1% | 84.1% |
| 3387010 | 1.1.17.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF7488 | 0.54 | 39.0 | 2.97e-01 | 77.0% | 33.8% |
| 4397319 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.53 | 39.0 | 3.04e-01 | 80.3% | 85.7% |
| 3630691 | 5.1.4.218 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT80_2nd | 0.52 | 42.0 | 2.74e-01 | 91.8% | 93.2% |
| 3253111 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 36.0 | 3.10e-01 | 75.4% | 56.2% |
| 3649973 | 5.1.4.21 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 | 0.50 | 40.0 | 2.55e-01 | 95.1% | 86.8% |