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NC_028935.2__YP_009210976.1__AVU06_gp072__00072
Bact-VirNC_028935.2__YP_009210976.1__AVU06_gp072__00072
Identity
- Accession:
- NC_028935 ↗
- Kingdom:
- phage
Quality
84.2
mean pLDDT
Taxonomy
TaxID: 1718669
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-102
Domain cluster:
rep: NC_021067.1__YP_007877304.1__VPBG_00143__00142__D37-164
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24116.2 best | DUF7390 | 28.7 | 1.90e-06 | 80.2% | 95.8% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ihmA04 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.64 | 39.0 | 4.42e-01 | 77.1% | 84.1% |
| 1ku2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 30.0 | 3.78e-01 | 100.0% | 82.5% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.58 | 27.0 | 3.51e-01 | 79.2% | 75.9% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 3.28e-01 | 99.0% | 80.5% |
| 3pg1A02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 44.0 | 3.53e-01 | 99.0% | 57.5% |
| 3gygC02 | 3.30.70.1410 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › yhjk (haloacid dehalogenase-like hydrolase protein) domain | 0.50 | 36.0 | 3.86e-01 | 76.0% | 100.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 162832 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.63 | 39.0 | 3.10e-01 | 96.9% | 31.1% |
| 4619498 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.59 | 30.0 | 3.04e-01 | 76.0% | 47.4% |
| 4384130 | 231.1.1.2 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 | 0.58 | 37.0 | 2.45e-01 | 100.0% | 15.6% |
| 3268808 | 609.1.1.1 ↗ | alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg | 0.56 | 39.0 | 3.44e-01 | 70.8% | 96.3% |
| 5023504 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.54 | 47.0 | 3.03e-01 | 100.0% | 45.1% |
| 3267998 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 3.17e-01 | 89.6% | 41.8% |
| 3278134 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.51 | 39.0 | 3.04e-01 | 81.2% | 65.3% |
| 3271981 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 40.0 | 3.48e-01 | 88.5% | 62.6% |