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NC_028937.1__YP_009211239.1__PBI_OVECHKIN_75__00075

Bact-Vir

NC_028937.1__YP_009211239.1__PBI_OVECHKIN_75__00075

Identity

Accession:
NC_028937 ↗
Kingdom:
phage

Quality

82.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cheoctovirus› Mycobacterium_phage_Ovechkin

TaxID: 1673889

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-91
PDB
Domain cluster: rep: ON045087.1__UPU15914.1__X__00088__D84-142
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.75 63.0 5.83e-01 93.0% 79.5%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.73 50.0 3.58e-01 71.9% 34.3%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.71 62.0 4.99e-01 100.0% 59.6%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.69 47.0 5.25e-01 73.7% 100.0%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.69 59.0 4.83e-01 100.0% 61.3%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.69 52.0 4.31e-01 84.2% 100.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.68 58.0 4.11e-01 100.0% 48.4%
2dwcB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.66 52.0 5.18e-01 100.0% 84.7%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 56.0 3.55e-01 100.0% 47.2%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 45.0 3.89e-01 75.4% 79.8%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.65 52.0 4.30e-01 93.0% 83.0%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 45.0 2.83e-01 73.7% 18.2%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.64 48.0 4.51e-01 86.0% 93.4%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 47.0 2.92e-01 78.9% 72.2%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 54.0 4.20e-01 96.5% 98.4%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.86e-01 91.2% 94.1%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 47.0 3.36e-01 82.5% 86.4%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.62 49.0 4.00e-01 93.0% 73.1%
2xziA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.62 46.0 2.81e-01 80.7% 41.0%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 51.0 3.86e-01 100.0% 35.9%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.61 43.0 4.16e-01 75.4% 87.9%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 54.0 4.62e-01 100.0% 76.3%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 3.90e-01 96.5% 93.4%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 3.05e-01 89.5% 94.2%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.49e-01 94.7% 95.9%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 3.96e-01 98.2% 96.3%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 40.0 3.62e-01 71.9% 87.4%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.60 43.0 3.05e-01 80.7% 69.0%
1oruA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.59 51.0 3.65e-01 100.0% 96.7%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 52.0 4.49e-01 100.0% 74.4%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 48.0 4.19e-01 98.2% 84.5%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 47.0 3.01e-01 89.5% 94.0%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 40.0 3.82e-01 80.7% 86.1%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.28e-01 100.0% 67.8%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.58e-01 100.0% 91.7%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.54 39.0 2.93e-01 82.5% 62.1%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.53 42.0 3.92e-01 87.7% 84.9%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 36.0 2.82e-01 71.9% 50.7%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.52 44.0 4.44e-01 100.0% 98.3%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 43.0 3.34e-01 100.0% 55.2%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.50 36.0 3.04e-01 80.7% 79.5%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.50 37.0 3.20e-01 82.5% 71.6%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3662509 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.72 58.0 4.67e-01 91.2% 62.6%
4346022 4111.1.1.1 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AAL_decarboxy 0.71 61.0 4.01e-01 100.0% 65.1%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.50e-01 93.0% 88.6%
3266906 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.69 48.0 3.02e-01 73.7% 77.0%
6452 4111.1.1.1 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AAL_decarboxy 0.69 59.0 5.44e-01 100.0% 88.3%
3972267 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.69 47.0 2.91e-01 71.9% 28.4%
3962065 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 50.0 3.27e-01 78.9% 94.4%
3230836 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.68 49.0 3.40e-01 78.9% 77.0%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.28e-01 91.2% 100.0%
3972888 5.1.4.163 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vgb_lyase 0.65 48.0 3.03e-01 78.9% 44.0%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 53.0 5.17e-01 93.0% 93.8%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 52.0 4.95e-01 93.0% 87.1%
4317534 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 48.0 3.11e-01 78.9% 64.0%
3799990 5.1.4.258 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.64 48.0 2.86e-01 78.9% 95.1%
3218687 5.1.3.128 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TEN_NHL 0.64 46.0 2.88e-01 78.9% 85.4%
3840072 4.2.1.0 ↗ beta barrels › SH3 › SAND › SAND 0.62 53.0 4.67e-01 96.5% 83.5%
3524786 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.62 46.0 3.18e-01 78.9% 70.3%
5025525 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 46.0 2.84e-01 78.9% 70.6%
4854958 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 54.0 4.59e-01 100.0% 70.8%
2323829 3484.1.1.2 ↗ a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.61 48.0 3.62e-01 91.2% 55.3%
3199895 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 55.0 4.60e-01 100.0% 70.5%
3505913 221.1.1.112 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_3 0.61 47.0 3.87e-01 86.0% 96.3%
3903484 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.61 43.0 3.61e-01 78.9% 69.1%
None — 0.60 41.0 2.64e-01 73.7% 28.6%
3969438 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 44.0 3.75e-01 80.7% 95.0%
4012945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.79e-01 98.2% 98.7%
1032602 4.1.1.127 ↗ beta barrels › SH3 › SH3 › SH3 › DtxR 0.59 48.0 4.19e-01 98.2% 84.5%
3980228 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 48.0 3.93e-01 100.0% 48.0%
3230548 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.58 42.0 2.91e-01 78.9% 67.0%
4950368 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 42.0 3.18e-01 78.9% 77.4%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 50.0 4.80e-01 98.2% 100.0%
3708221 633.23.1.23 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.58 43.0 3.10e-01 80.7% 77.0%
4032337 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.58 44.0 3.25e-01 86.0% 43.6%
4949974 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.83e-01 87.7% 92.9%
3701133 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 42.0 2.98e-01 82.5% 68.3%
4428913 5.1.4.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.57 44.0 2.83e-01 89.5% 93.2%
3213871 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 43.0 2.68e-01 84.2% 71.2%
3598725 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 42.0 3.01e-01 82.5% 66.7%
3599169 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.49e-01 80.7% 81.0%
None — 0.56 40.0 2.59e-01 77.2% 49.0%
3408722 633.23.1.20 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Atthog 0.56 40.0 3.00e-01 80.7% 71.4%
3630433 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.34e-01 80.7% 83.5%
3808306 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.55 47.0 2.97e-01 96.5% 98.1%
3931130 4300.1.1.0 ↗ beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like 0.53 36.0 2.76e-01 71.9% 28.7%
2265 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.52 44.0 3.34e-01 100.0% 39.6%
4388250 5.1.4.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.51 45.0 2.84e-01 100.0% 29.2%
3713772 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.51 36.0 3.35e-01 78.9% 78.5%