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YP_009211300.1
Arc-VirNC_028938__YP_009211300.1__AVU01-gp30__00030
Identity
- Accession:
- NC_028938 ↗
- Protein ID:
- YP_009211300.1 ↗
- Kingdom:
- archaea
Quality
74.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-86
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ifrB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 51.0 | 3.62e-01 | 93.0% | 86.8% |
| 1zylA01 | 3.30.200.70 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.62 | 43.0 | 4.39e-01 | 73.2% | 87.1% |
| 1ub4A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 47.0 | 4.21e-01 | 93.0% | 68.9% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.56 | 45.0 | 3.56e-01 | 91.5% | 89.4% |
| 1s7mA03 | 2.20.25.140 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 25.0 | 3.22e-01 | 76.1% | 100.0% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.55 | 35.0 | 3.44e-01 | 80.3% | 59.7% |
| 3k1rA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 43.0 | 3.83e-01 | 100.0% | 79.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3259001 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.53 | 42.0 | 3.05e-01 | 90.1% | 65.5% |
| 3283087 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.52 | 43.0 | 2.47e-01 | 93.0% | 27.9% |