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YP_009211300.1

Arc-Vir

NC_028938__YP_009211300.1__AVU01-gp30__00030

Identity

Accession:
NC_028938 ↗
Protein ID:
YP_009211300.1 ↗
Kingdom:
archaea

Quality

74.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-86
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ifrB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 51.0 3.62e-01 93.0% 86.8%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.62 43.0 4.39e-01 73.2% 87.1%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.21e-01 93.0% 68.9%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.56 45.0 3.56e-01 91.5% 89.4%
1s7mA03 2.20.25.140 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 25.0 3.22e-01 76.1% 100.0%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.55 35.0 3.44e-01 80.3% 59.7%
3k1rA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 43.0 3.83e-01 100.0% 79.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3259001 2004.1.2.2 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP 0.53 42.0 3.05e-01 90.1% 65.5%
3283087 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.52 43.0 2.47e-01 93.0% 27.9%