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NC_028944.1__YP_009212093.1__QLX47_gp153__00153

Bact-Vir

NC_028944.1__YP_009212093.1__QLX47_gp153__00153

Identity

Accession:
NC_028944 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Wphvirus› Bacillus_phage_Eyuki

TaxID: 1690431

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-77
PDB
Domain cluster: rep: OK499976.1__UGO48949.1__JARJAR_135__00135__D4-58
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.74 59.0 3.60e-01 100.0% 14.8%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.72 56.0 3.57e-01 98.3% 16.3%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.67 53.0 3.41e-01 100.0% 17.3%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 58.0 3.70e-01 100.0% 35.5%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 57.0 3.54e-01 100.0% 27.1%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 55.0 5.17e-01 94.9% 77.5%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 57.0 3.51e-01 100.0% 27.8%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 56.0 3.48e-01 98.3% 20.4%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 56.0 3.51e-01 100.0% 30.7%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 44.0 4.13e-01 72.9% 100.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.64 43.0 3.67e-01 71.2% 50.0%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 54.0 3.40e-01 100.0% 17.8%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.63 45.0 4.15e-01 100.0% 58.2%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 54.0 3.39e-01 100.0% 29.4%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 4.00e-01 89.8% 75.2%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.62 43.0 3.58e-01 74.6% 95.5%
3v8uA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.62 45.0 3.97e-01 94.9% 52.2%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 53.0 3.41e-01 100.0% 34.7%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 45.0 2.93e-01 94.9% 16.9%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.60 46.0 4.13e-01 94.9% 59.5%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 46.0 3.06e-01 84.7% 41.6%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 4.03e-01 88.1% 55.7%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 47.0 3.03e-01 98.3% 17.1%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 47.0 3.50e-01 93.2% 56.9%
2y9fA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 45.0 3.50e-01 89.8% 69.1%
3sb1A01 3.30.1370.140 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain 0.58 43.0 3.73e-01 91.5% 49.5%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.85e-01 89.8% 84.5%
3lppA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.58 47.0 3.30e-01 100.0% 94.5%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 44.0 3.45e-01 89.8% 79.3%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.56 46.0 4.17e-01 89.8% 86.3%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 4.00e-01 83.1% 84.9%
1jqlA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 43.0 3.52e-01 88.1% 97.5%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.55 46.0 3.61e-01 91.5% 61.3%
2uurA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 39.0 2.74e-01 76.3% 46.7%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 46.0 2.93e-01 98.3% 21.8%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3933042 5.1.3.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth 0.79 58.0 3.49e-01 98.3% 12.4%
4980041 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 55.0 6.12e-01 86.4% 95.6%
4943339 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 57.0 4.78e-01 79.7% 50.0%
3740435 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.74 58.0 3.57e-01 98.3% 14.7%
5025555 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.74 58.0 3.69e-01 98.3% 17.9%
3707403 5.1.4.382 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF1899, ANAPC4_WD40, WD40_4 0.73 57.0 3.48e-01 100.0% 13.1%
3900479 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.73 60.0 3.82e-01 98.3% 19.3%
3816528 5.1.2.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL 0.71 56.0 4.10e-01 98.3% 31.5%
3709381 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.70 62.0 3.70e-01 100.0% 16.1%
3504193 220.1.1.49 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.69 59.0 4.61e-01 96.6% 46.2%
5035450 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 49.0 4.23e-01 76.3% 47.4%
3242246 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.68 59.0 3.68e-01 98.3% 16.9%
3215469 5.1.4.33 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1899,WD40_4 0.67 60.0 3.61e-01 100.0% 24.7%
3935563 5.1.3.140 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL, DUF5128 0.66 58.0 3.60e-01 100.0% 28.7%
3422280 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.66 58.0 4.76e-01 100.0% 89.9%
169076 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.66 58.0 3.71e-01 100.0% 35.9%
None — 0.66 59.0 3.59e-01 100.0% 25.1%
4304850 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.65 56.0 3.49e-01 98.3% 26.5%
2387792 1205.1.1.0 ↗ a+b two layers › C-terminal domain of CdiA toxin 0.65 49.0 4.61e-01 86.4% 65.3%
3963560 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.65 50.0 5.01e-01 84.7% 90.0%
4566539 5.1.4.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.65 57.0 3.42e-01 100.0% 23.9%
3998243 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 54.0 3.41e-01 100.0% 16.8%
3943583 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.64 55.0 3.39e-01 100.0% 31.8%
3573633 5.1.3.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth 0.64 55.0 3.51e-01 100.0% 32.1%
5068496 5.1.4.471 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NHL 0.63 54.0 3.14e-01 100.0% 15.6%
4274162 5.1.3.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.63 53.0 3.45e-01 98.3% 20.4%
3735233 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.63 54.0 3.34e-01 100.0% 29.0%
4026604 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.63 51.0 4.20e-01 91.5% 75.5%
4435421 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.62 54.0 3.25e-01 100.0% 20.7%
4371091 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.62 53.0 3.36e-01 100.0% 30.8%
4656512 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.62 47.0 4.76e-01 94.9% 83.3%
3198523 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.61 53.0 3.21e-01 100.0% 26.9%
3460828 5.1.3.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.60 52.0 3.22e-01 100.0% 43.8%
3506401 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 51.0 3.28e-01 100.0% 29.0%
3212894 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.44e-01 100.0% 33.6%
4134791 5.1.3.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.59 52.0 3.40e-01 100.0% 33.7%
3336515 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 49.0 3.14e-01 100.0% 18.1%
2983124 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.58 46.0 3.55e-01 91.5% 67.5%
4996248 331.19.1.0 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains 0.57 49.0 4.28e-01 94.9% 63.3%
4979564 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 41.0 3.91e-01 93.2% 64.3%
2123 6.1.1.19 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RicinB_lectin_2 0.57 45.0 3.52e-01 91.5% 80.4%
4940816 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 45.0 3.98e-01 96.6% 65.3%
3684031 7512.1.1.1 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.55 47.0 3.15e-01 100.0% 31.7%
4958980 331.2.1.14 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › Fer4_7 0.55 42.0 3.16e-01 83.1% 44.7%
3529940 292.2.1.11 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34_2nd 0.54 40.0 3.49e-01 83.1% 59.4%
4625643 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.54 40.0 3.28e-01 83.1% 76.5%
3360656 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.52 43.0 3.45e-01 96.6% 44.5%
4948381 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 42.0 3.78e-01 96.6% 63.3%
5048260 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 42.0 3.20e-01 94.9% 61.9%
4978135 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 41.0 3.22e-01 94.9% 64.1%