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NC_028944.1__YP_009212228.1__QLX47_gp288__00288

Bact-Vir

NC_028944.1__YP_009212228.1__QLX47_gp288__00288

Identity

Accession:
NC_028944 ↗
Kingdom:
phage

Quality

74.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-99
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.82 64.0 6.23e-01 81.2% 100.0%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.81 60.0 4.84e-01 77.5% 63.4%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.81 59.0 4.13e-01 76.2% 35.1%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.80 55.0 6.03e-01 70.0% 100.0%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 57.0 6.28e-01 73.8% 95.2%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.80 59.0 6.05e-01 77.5% 97.4%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.80 57.0 6.38e-01 73.8% 96.8%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 56.0 5.83e-01 73.8% 100.0%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.79 57.0 4.89e-01 76.2% 64.8%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.77 60.0 4.80e-01 83.7% 49.7%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.77 50.0 5.56e-01 76.2% 86.9%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 59.0 5.34e-01 82.5% 75.9%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 55.0 3.91e-01 76.2% 45.3%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.76 55.0 5.50e-01 76.2% 86.6%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 55.0 6.16e-01 76.2% 100.0%
3qa8A04 1.20.1270.250 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.76 55.0 3.88e-01 76.2% 56.7%
4hkaA01 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 64.0 4.24e-01 90.0% 78.2%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 50.0 5.68e-01 76.2% 94.8%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.74 53.0 5.55e-01 75.0% 85.9%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.74 53.0 4.31e-01 75.0% 42.9%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.74 53.0 3.94e-01 75.0% 87.2%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.73 53.0 5.19e-01 76.2% 72.7%
6cgaC02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 53.0 5.36e-01 75.0% 76.9%
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.73 58.0 5.15e-01 85.0% 100.0%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.73 56.0 5.39e-01 81.2% 93.3%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 55.0 5.79e-01 85.0% 88.9%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 57.0 5.44e-01 83.7% 89.1%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.73 63.0 5.45e-01 93.8% 84.2%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 50.0 5.17e-01 72.5% 76.3%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 55.0 5.65e-01 83.7% 87.8%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 53.0 5.35e-01 78.8% 81.0%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 60.0 4.25e-01 91.3% 75.1%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.71 53.0 4.36e-01 78.8% 87.9%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 60.0 5.57e-01 92.5% 73.5%
4o6yB00 1.20.120.1770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.71 63.0 4.64e-01 98.8% 65.9%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.70 54.0 5.26e-01 83.7% 91.1%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 49.0 5.43e-01 72.5% 100.0%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.69 54.0 5.18e-01 86.3% 74.7%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 47.0 4.51e-01 73.8% 61.1%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.68 62.0 6.03e-01 98.8% 96.5%
1ni3A03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.67 45.0 4.33e-01 73.8% 60.4%
4kp3C00 1.20.58.1770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 46.0 4.61e-01 71.2% 70.4%
3kdqA00 6.10.320.10 Special › Helix non-globular › Ferritin › 0.66 55.0 4.52e-01 93.8% 91.4%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 51.0 4.85e-01 86.3% 73.5%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 51.0 4.54e-01 88.7% 82.5%
4qgpB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.64 53.0 4.86e-01 92.5% 78.5%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 56.0 4.29e-01 100.0% 82.1%
6z01B03 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.63 46.0 3.74e-01 77.5% 44.2%
1dciA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.59 40.0 4.40e-01 83.7% 92.1%
2fd5A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 44.0 3.79e-01 100.0% 86.4%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3401272 174.1.1.29 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728 0.86 67.0 5.13e-01 82.5% 84.7%
3247204 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.85 55.0 6.32e-01 75.0% 88.3%
3613914 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.85 63.0 6.58e-01 77.5% 84.0%
5041482 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.84 63.0 5.88e-01 77.5% 65.3%
3641083 4323.1.1.8 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › NET2A 0.83 59.0 4.34e-01 73.8% 49.7%
3838316 3567.1.1.150 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › H-kinase_dim 0.83 58.0 6.02e-01 72.5% 81.3%
3386373 605.1.1.2 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.83 57.0 6.29e-01 71.2% 92.3%
3657504 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.80 58.0 4.84e-01 76.2% 58.5%
329329 3814.1.1.1 alpha bundles › Uncharacterized protein GSU0061 › Uncharacterized protein GSU0061 › Uncharacterized protein GSU0061 › DUF3232 0.80 70.0 5.78e-01 93.8% 74.1%
3633621 192.5.1.16 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PF26729 0.79 60.0 6.02e-01 80.0% 97.5%
4331551 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 61.0 4.80e-01 80.0% 43.3%
3968965 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.78 60.0 5.77e-01 83.7% 72.2%
3516461 603.1.1.103 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.78 62.0 5.51e-01 83.7% 75.5%
3671258 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.78 57.0 4.85e-01 77.5% 59.2%
3430338 150.1.1.144 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF4220 0.78 64.0 5.13e-01 88.7% 78.7%
3635408 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.77 68.0 5.52e-01 93.8% 88.6%
3585987 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.77 58.0 6.03e-01 83.7% 85.3%
3404638 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.77 60.0 5.55e-01 83.7% 80.0%
4519046 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.77 58.0 4.89e-01 81.2% 50.4%
4673482 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.77 60.0 4.45e-01 82.5% 37.4%
3619957 5055.1.1.0 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.77 58.0 5.68e-01 83.7% 75.3%
3976663 3812.1.1.1 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E 0.76 56.0 6.07e-01 77.5% 100.0%
3644022 6055.1.1.3 extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Utp11 0.75 58.0 5.26e-01 81.2% 68.6%
3619413 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.75 53.0 3.60e-01 91.3% 20.3%
3777869 192.13.1.2 alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Nexin_C 0.75 56.0 4.91e-01 83.7% 53.3%
4025790 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.75 63.0 5.29e-01 91.3% 83.7%
3509865 192.22.1.0 alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 0.75 54.0 4.85e-01 80.0% 55.5%
197440 5055.1.1.2 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › DIP0205-like_N 0.74 54.0 5.62e-01 76.2% 86.1%
3408532 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.74 56.0 4.32e-01 78.8% 41.8%
4451131 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.74 56.0 4.62e-01 81.2% 89.7%
4357799 192.13.1.1 alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1 0.74 63.0 5.32e-01 96.2% 56.9%
4298288 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 55.0 4.61e-01 78.8% 98.5%
3650120 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.73 57.0 3.82e-01 82.5% 86.3%
3736924 632.8.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.73 62.0 5.17e-01 93.8% 88.6%
3906696 101.1.2.725 alpha arrays › HTH › HTH › winged helix domain › TAPR1-like 0.73 53.0 4.60e-01 76.2% 52.5%
3513582 192.8.1.36 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain 0.72 54.0 4.84e-01 78.8% 58.2%
4257134 192.5.1.35 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Hobbit 0.72 54.0 5.00e-01 78.8% 64.0%
4608920 192.8.1.475 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › RLIP76_Ral-bd 0.72 48.0 4.77e-01 77.5% 64.7%
4400912 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 57.0 5.12e-01 86.3% 69.1%
3859640 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 61.0 4.59e-01 93.8% 77.4%
4187493 603.1.1.103 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.70 59.0 4.84e-01 92.5% 89.0%
4578841 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 59.0 5.71e-01 92.5% 85.6%
3787065 109.4.1.381 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rrn11 0.69 59.0 4.23e-01 95.0% 33.5%
3245783 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.67 51.0 3.18e-01 87.5% 14.9%
4649366 304.58.1.0 a+b two layers › Alpha-beta plaits › FepE-like › FepE-like 0.67 52.0 3.55e-01 83.7% 93.3%
4984419 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.67 54.0 3.88e-01 90.0% 89.9%
3396744 603.1.1.6 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.66 59.0 4.45e-01 100.0% 74.4%
3249720 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.65 55.0 4.73e-01 93.8% 79.2%
3720488 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.65 56.0 4.71e-01 93.8% 66.2%
3206976 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.64 53.0 4.77e-01 92.5% 90.4%