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NC_028945.1__YP_009212293.1__AVT40_gp053__00053

Bact-Vir

Identity

Accession:: NC_028945 ↗
Kingdom:: phage

Quality

82.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Emdodecavirus› Sinorhizobium_phage_phiN3

TaxID: 1647405

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-112

PDB

Domain cluster: rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3by7E00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.88	59.0	7.06e-01	77.5%	100.0%
4c92A00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.81	51.0	4.78e-01	73.9%	53.8%
1d3bB00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.65	43.0	4.91e-01	74.8%	90.1%
4c92C00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.65	39.0	4.43e-01	71.2%	82.3%
1ne8A00	2.30.30.110	Mainly Beta › Roll › SH3 type barrels. ›	0.59	46.0	4.59e-01	83.8%	95.7%
5hk0B00	2.30.30.110	Mainly Beta › Roll › SH3 type barrels. ›	0.57	45.0	4.58e-01	84.7%	95.3%
5uctB00	2.30.30.110	Mainly Beta › Roll › SH3 type barrels. ›	0.56	44.0	4.65e-01	87.4%	99.0%
4a4kA02	2.30.30.1160	Mainly Beta › Roll › SH3 type barrels. ›	0.54	41.0	3.93e-01	81.1%	85.0%
3hl8A02	3.30.1520.20	Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2	0.51	38.0	3.60e-01	79.3%	75.4%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4813032	4.1.1.328 ↗	beta barrels › SH3 › SH3 › SH3 › Sm_like	0.88	60.0	7.09e-01	79.3%	98.7%
4030048	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.77	51.0	5.27e-01	75.7%	71.4%
1549365	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.77	48.0	5.50e-01	73.0%	84.3%
3927391	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.77	48.0	5.05e-01	70.3%	68.9%
4993070	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.76	49.0	5.87e-01	71.2%	96.0%
3626400	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.75	50.0	4.70e-01	76.6%	56.9%
4029154	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.75	46.0	4.56e-01	72.1%	58.0%
3701868	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.75	44.0	4.91e-01	72.1%	73.3%
3785079	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.74	49.0	4.47e-01	73.0%	51.7%
3482844	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.70	46.0	5.21e-01	74.8%	87.1%
3176686	4.1.1.81 ↗	beta barrels › SH3 › SH3 › SH3 › LSM14	0.70	48.0	5.45e-01	76.6%	91.8%
3703836	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.69	50.0	5.00e-01	75.7%	84.3%
3722424	4.1.1.19 ↗	beta barrels › SH3 › SH3 › SH3 › LSM	0.66	46.0	4.87e-01	71.2%	84.0%
3948209	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.62	37.0	4.36e-01	77.5%	86.7%
5027789	4.1.1.30 ↗	beta barrels › SH3 › SH3 › SH3 › PemK_toxin	0.56	44.0	4.63e-01	84.7%	98.0%
3698054	2.1.1.72 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC	0.56	44.0	3.79e-01	84.7%	94.3%
4950222	4.1.1.30 ↗	beta barrels › SH3 › SH3 › SH3 › PemK_toxin	0.55	45.0	4.52e-01	87.4%	96.4%
4019093	3257.1.1.1 ↗	a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N	0.54	41.0	3.29e-01	81.1%	86.8%
4323235	4.1.1.97 ↗	beta barrels › SH3 › SH3 › SH3 › DUF150_C	0.53	37.0	3.77e-01	71.2%	75.5%
3230356	5.1.11.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed	0.51	37.0	2.39e-01	76.6%	76.0%
3316786	9.15.1.1 ↗	beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD	0.51	35.0	3.01e-01	71.2%	62.7%
1549743	4.1.1.15 ↗	beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e	0.50	37.0	3.34e-01	95.5%	54.4%
3484793	4111.1.1.3 ↗	a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › DUF1907	0.50	37.0	2.70e-01	78.4%	55.9%