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NC_028945.1__YP_009212612.1__AVT40_gp161__00372

Bact-Vir

NC_028945.1__YP_009212612.1__AVT40_gp161__00372

Identity

Accession:
NC_028945 ↗
Kingdom:
phage

Quality

71.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.83 54.0 4.70e-01 100.0% 46.8%
4xzjA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.77 61.0 4.04e-01 87.0% 50.2%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 68.0 5.02e-01 100.0% 60.7%
3eesA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 67.0 5.03e-01 100.0% 64.9%
3h95A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.75 66.0 4.99e-01 100.0% 60.3%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.75 59.0 3.99e-01 87.0% 60.4%
6k93A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.74 58.0 3.79e-01 87.0% 40.6%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.74 58.0 3.98e-01 87.0% 58.4%
3a6sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.73 63.0 4.86e-01 100.0% 65.6%
2hz7A05 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.73 63.0 4.83e-01 100.0% 85.2%
3f13B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 63.0 4.65e-01 100.0% 49.7%
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.71 54.0 3.73e-01 87.0% 60.1%
1ojqA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.70 55.0 3.70e-01 87.0% 60.8%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 49.0 3.93e-01 100.0% 36.4%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 47.0 4.21e-01 70.4% 52.0%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 59.0 4.55e-01 100.0% 61.8%
7sbiA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.69 62.0 5.65e-01 100.0% 100.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 4.26e-01 72.2% 52.0%
3q91B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 58.0 4.50e-01 100.0% 61.1%
1ef1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.69 60.0 5.35e-01 100.0% 98.7%
2kanA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 61.0 5.53e-01 100.0% 97.3%
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.68 53.0 3.60e-01 87.0% 59.9%
4hwiB01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 59.0 5.42e-01 100.0% 98.6%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 57.0 4.75e-01 98.1% 96.9%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.67 52.0 5.16e-01 100.0% 82.1%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.67 44.0 3.96e-01 100.0% 50.7%
2jx5A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.66 58.0 5.38e-01 100.0% 88.4%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 57.0 5.01e-01 100.0% 81.7%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 5.12e-01 100.0% 90.2%
3hhjB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.63 52.0 4.09e-01 100.0% 65.6%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 54.0 4.61e-01 98.1% 75.6%
6klwF03 3.10.20.110 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 52.0 4.26e-01 98.1% 93.6%
6u7tA03 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 51.0 4.12e-01 100.0% 65.3%
1l5pA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.61 51.0 4.32e-01 96.3% 100.0%
4kdiD00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 52.0 4.68e-01 98.1% 97.3%
1ff9A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 52.0 3.61e-01 100.0% 55.6%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.59 52.0 3.82e-01 100.0% 96.6%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.58 40.0 4.20e-01 74.1% 87.0%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 42.0 3.26e-01 85.2% 32.8%
1o5wB02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.58 43.0 3.18e-01 87.0% 60.3%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 47.0 4.04e-01 100.0% 86.7%
1zpsA01 3.10.20.810 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase 0.57 45.0 3.97e-01 100.0% 77.9%
2cqoA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 50.0 4.19e-01 100.0% 87.0%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 47.0 3.97e-01 100.0% 62.9%
4j80A03 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.55 38.0 3.31e-01 77.8% 51.5%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.55 48.0 3.54e-01 100.0% 47.6%
2m4vA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.54 40.0 3.57e-01 81.5% 60.0%
4j80A02 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.53 40.0 3.84e-01 87.0% 72.7%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.43e-01 100.0% 70.1%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 41.0 3.71e-01 100.0% 98.8%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.32e-01 98.1% 74.0%
2rf4E02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 45.0 3.86e-01 98.1% 73.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4104219 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.84 58.0 5.40e-01 72.2% 64.6%
3198325 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.81 55.0 3.38e-01 72.2% 13.0%
3356712 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 54.0 5.83e-01 70.4% 93.3%
3252916 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.79 54.0 4.40e-01 72.2% 80.0%
3284595 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 54.0 5.32e-01 75.9% 67.2%
4947785 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.78 69.0 6.41e-01 100.0% 84.1%
4542419 239.2.1.1 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.76 68.0 5.22e-01 100.0% 60.8%
4061290 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.76 67.0 6.10e-01 100.0% 86.3%
2410012 237.1.1.2 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART 0.76 59.0 4.09e-01 87.0% 49.2%
3183652 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.75 66.0 5.27e-01 100.0% 89.1%
3342335 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.75 66.0 5.39e-01 100.0% 83.0%
4976953 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.75 56.0 5.70e-01 96.3% 81.5%
2547952 237.1.1.34 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART, ADPrib_exo_Tox 0.74 58.0 3.79e-01 87.0% 40.6%
3895174 206.1.1.76 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, Pkinase_fungal 0.73 48.0 2.95e-01 100.0% 11.0%
3917309 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.73 48.0 2.97e-01 100.0% 11.6%
4192882 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.73 64.0 5.17e-01 100.0% 87.6%
3991944 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.72 48.0 3.03e-01 100.0% 13.7%
3475469 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.71 62.0 4.98e-01 100.0% 73.6%
4480497 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.71 62.0 5.78e-01 100.0% 81.4%
3706839 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.71 60.0 5.02e-01 98.1% 83.0%
4404320 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.71 61.0 5.26e-01 100.0% 88.9%
578 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.69 47.0 3.57e-01 72.2% 30.5%
1175108 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.69 48.0 3.80e-01 74.1% 36.6%
5028514 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.68 55.0 5.39e-01 100.0% 81.7%
4946739 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.68 59.0 5.62e-01 100.0% 86.2%
3585671 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.68 46.0 4.74e-01 70.4% 76.0%
3243274 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.68 46.0 2.86e-01 100.0% 11.8%
4003553 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.68 47.0 2.79e-01 100.0% 9.2%
3792511 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.66 48.0 2.90e-01 100.0% 11.8%
4989777 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 54.0 3.32e-01 94.4% 15.6%
4654417 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.65 53.0 4.55e-01 100.0% 79.0%
3226474 2.1.1.253 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29478 0.65 44.0 4.00e-01 70.4% 96.0%
3168716 242.1.1.9 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › ATP-synt_ab_Xtn 0.65 48.0 4.94e-01 98.1% 84.0%
3973104 4987.1.1.0 few secondary structure elements › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal protein L31p 0.63 45.0 4.37e-01 100.0% 68.3%
4358456 4987.1.1.1 few secondary structure elements › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal_L31 0.63 45.0 4.51e-01 100.0% 74.5%
3938105 2.1.1.253 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29478 0.63 42.0 3.95e-01 70.4% 97.1%
3839369 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.62 42.0 3.65e-01 70.4% 50.0%
3742708 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 52.0 4.32e-01 100.0% 69.5%
4077893 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 41.0 2.36e-01 70.4% 7.9%
2674741 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.60 41.0 4.13e-01 72.2% 78.2%
4549410 506.2.1.0 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain 0.60 41.0 2.26e-01 72.2% 4.7%
3914796 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.60 53.0 4.21e-01 100.0% 75.5%
3232445 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 47.0 4.59e-01 100.0% 81.7%
3386704 221.8.1.3 a+b two layers › beta-Grasp › GfcC › GfcC › SLBB 0.60 52.0 4.69e-01 100.0% 93.3%
3785051 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 51.0 4.44e-01 100.0% 89.4%
4373611 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.59 48.0 3.50e-01 100.0% 57.1%
3939070 11.1.1.1173 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7757 0.58 50.0 3.89e-01 100.0% 95.2%
3235875 376.1.4.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.56 41.0 3.84e-01 100.0% 61.4%
5030282 2011.2.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.54 42.0 2.78e-01 87.0% 25.0%
4228956 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 4.13e-01 90.7% 76.9%
3937060 1.1.1.8 beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.52 44.0 3.71e-01 98.1% 65.3%
3388514 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 36.0 3.23e-01 75.9% 89.4%
3301699 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 39.0 3.25e-01 87.0% 46.7%
5061040 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.50 36.0 2.70e-01 83.3% 29.4%