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NC_028946.1__YP_009212726.1__AVV07_gp084__00084
Bact-VirNC_028946.1__YP_009212726.1__AVV07_gp084__00084
Identity
- Accession:
- NC_028946 ↗
- Kingdom:
- phage
Quality
83.3
mean pLDDT
Taxonomy
TaxID: 1698357
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-91
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.76 | 54.0 | 4.72e-01 | 76.1% | 49.6% |
| 5j1hA01 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 66.0 | 5.17e-01 | 100.0% | 74.2% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.72 | 50.0 | 4.63e-01 | 72.7% | 81.2% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 63.0 | 5.20e-01 | 97.7% | 87.7% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.68 | 52.0 | 4.84e-01 | 100.0% | 65.5% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.68 | 56.0 | 5.12e-01 | 97.7% | 67.5% |
| 2vzbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.68 | 48.0 | 3.93e-01 | 75.0% | 39.5% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.67 | 53.0 | 4.34e-01 | 86.4% | 48.2% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 59.0 | 5.16e-01 | 100.0% | 71.6% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.64 | 44.0 | 3.91e-01 | 77.3% | 50.0% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 44.0 | 4.01e-01 | 86.4% | 55.0% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.56 | 50.0 | 4.66e-01 | 98.9% | 85.6% |
| 3ezqA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 47.0 | 4.33e-01 | 95.5% | 77.4% |
| 1st6A03 | 1.20.120.810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle | 0.51 | 45.0 | 3.35e-01 | 98.9% | 80.8% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4649114 | 3559.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 | 0.76 | 55.0 | 5.27e-01 | 75.0% | 70.0% |
| 2968353 | 3758.2.1.2 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB | 0.74 | 67.0 | 4.79e-01 | 100.0% | 71.4% |
| 3408094 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.73 | 58.0 | 5.02e-01 | 86.4% | 55.6% |
| 3573035 | 109.4.1.3370 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PL48 | 0.73 | 63.0 | 5.47e-01 | 95.5% | 79.3% |
| 3353866 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.72 | 51.0 | 4.06e-01 | 72.7% | 67.1% |
| 3605875 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.71 | 52.0 | 4.74e-01 | 81.8% | 59.1% |
| 3892960 | 3291.1.1.86 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PL48 | 0.70 | 63.0 | 5.41e-01 | 100.0% | 80.7% |
| 3423917 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.70 | 52.0 | 4.28e-01 | 86.4% | 44.5% |
| 3410900 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.70 | 58.0 | 4.93e-01 | 100.0% | 55.2% |
| 3605559 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.68 | 51.0 | 4.75e-01 | 100.0% | 64.2% |
| 3663674 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.64 | 50.0 | 4.15e-01 | 86.4% | 46.7% |
| 3287859 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.63 | 47.0 | 4.32e-01 | 79.5% | 73.9% |
| 3889743 | 105.1.1.1 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH | 0.62 | 36.0 | 3.56e-01 | 84.1% | 51.6% |
| 3839827 | 1075.5.1.2 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ | 0.62 | 46.0 | 3.44e-01 | 79.5% | 86.1% |
| 3270478 | 6155.1.1.4 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC | 0.61 | 42.0 | 3.96e-01 | 70.5% | 58.1% |
| 4357931 | 3579.1.1.0 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J | 0.60 | 41.0 | 3.71e-01 | 72.7% | 49.6% |
| 3406162 | 4006.1.1.13 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › DUF842 | 0.60 | 47.0 | 4.24e-01 | 85.2% | 60.8% |
| 4136906 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.59 | 48.0 | 4.33e-01 | 100.0% | 64.2% |
| 3509258 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 44.0 | 3.39e-01 | 85.2% | 69.5% |
| 3618935 | 192.15.1.77 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › OST3_OST6 | 0.56 | 47.0 | 4.35e-01 | 98.9% | 71.3% |
| 3541737 | 3914.1.1.2 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer | 0.55 | 48.0 | 2.83e-01 | 100.0% | 24.4% |
| 3752135 | 109.4.1.919 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_SCC3-SA | 0.53 | 37.0 | 2.58e-01 | 78.4% | 21.3% |
| 3735805 | 7523.1.1.54 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DUF3533 | 0.50 | 45.0 | 3.58e-01 | 100.0% | 72.0% |