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NC_028950.1__YP_009212938.1__AVU38_gp089__00089

Bact-Vir

NC_028950.1__YP_009212938.1__AVU38_gp089__00089

Identity

Accession:
NC_028950 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Chiangmaivirus› Ralstonia_phage_RSL2

TaxID: 1585840

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-191
PDB
Domain cluster: rep: IMGVR_UViG_3300010237_000006-3300010237-Ga0136250_1000002017__D103-269
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.90 76.0 8.10e-01 99.4% 98.7%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.87 75.0 7.85e-01 99.4% 97.0%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 68.0 7.24e-01 97.8% 100.0%
3bzcA03 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.77 54.0 6.32e-01 96.7% 100.0%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.76 54.0 6.29e-01 98.3% 100.0%
1kcfB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 71.0 6.53e-01 100.0% 82.0%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 50.0 5.65e-01 99.4% 100.0%
1u6zA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 44.0 5.26e-01 97.8% 100.0%
3mdqA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 44.0 5.22e-01 82.9% 99.2%
1t6cA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 44.0 5.18e-01 82.3% 98.4%
3cerC01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 44.0 5.07e-01 82.9% 97.7%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.62 50.0 5.12e-01 100.0% 87.6%
6hcdD00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 34.0 3.81e-01 95.6% 74.8%
4ljsA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 38.0 4.22e-01 100.0% 84.1%
4eclA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.56 35.0 3.32e-01 74.6% 50.7%
2e6mA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 46.0 4.59e-01 100.0% 83.9%
3htvA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 44.0 4.55e-01 81.8% 88.1%
1gz1A00 3.20.20.40 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase 0.55 47.0 3.74e-01 91.2% 92.3%
1mdbA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 33.0 3.53e-01 84.0% 67.7%
1c2yA00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.54 40.0 4.24e-01 100.0% 88.4%
5nckA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 41.0 4.16e-01 80.7% 85.5%
4htlA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 4.23e-01 83.4% 89.5%
5hvmA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 43.0 4.13e-01 90.6% 74.5%
1di0A00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.53 40.0 4.34e-01 100.0% 95.3%
5lqdA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 43.0 4.14e-01 92.8% 76.3%
4xfjB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 44.0 4.49e-01 89.5% 98.3%
1ivnA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 46.0 4.70e-01 100.0% 97.8%
4o1eB00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.51 37.0 3.26e-01 73.5% 88.0%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 4.19e-01 100.0% 87.0%
4nzpA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 36.0 4.06e-01 79.6% 97.8%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4218879 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.92 77.0 8.35e-01 98.9% 100.0%
4106513 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.91 78.0 8.10e-01 100.0% 93.5%
4373226 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.91 77.0 7.70e-01 100.0% 84.9%
4484979 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.91 77.0 8.03e-01 100.0% 94.0%
4202129 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.91 77.0 8.24e-01 99.4% 99.4%
4631411 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.90 77.0 8.21e-01 99.4% 100.0%
3966304 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.90 75.0 8.13e-01 98.9% 100.0%
4414942 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.89 75.0 8.00e-01 98.3% 97.5%
4069907 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.89 78.0 8.10e-01 100.0% 95.9%
4522962 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.89 77.0 7.82e-01 100.0% 91.4%
4240117 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.89 78.0 8.00e-01 100.0% 94.2%
4252006 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.89 76.0 7.97e-01 99.4% 96.4%
4529580 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.88 75.0 7.99e-01 98.9% 99.4%
4938348 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.86 74.0 7.77e-01 99.4% 97.0%
3784998 2484.1.1.57 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt 0.82 78.0 6.75e-01 100.0% 84.9%
3178498 2484.1.1.57 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt 0.82 78.0 6.49e-01 100.0% 83.7%
3720313 2484.1.1.57 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt 0.82 78.0 6.63e-01 100.0% 93.5%
4669382 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.80 69.0 7.21e-01 98.3% 98.8%
4659593 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.73 53.0 6.00e-01 100.0% 96.4%
3176532 2484.1.1.205 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.73 61.0 5.88e-01 100.0% 78.5%
4391834 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.72 55.0 6.13e-01 99.4% 99.3%
4229239 2484.1.1.85 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC_III 0.66 60.0 5.41e-01 100.0% 72.8%
11204 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.65 44.0 5.17e-01 82.3% 97.6%
4308194 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.61 25.0 3.51e-01 85.1% 77.6%
3411652 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.60 41.0 4.70e-01 87.3% 95.4%
3603301 7592.1.1.6 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N 0.60 42.0 4.68e-01 89.0% 90.7%
3347048 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.59 54.0 3.96e-01 100.0% 81.3%
4517509 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.59 52.0 3.88e-01 96.1% 83.4%
2391911 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 34.0 3.81e-01 95.6% 74.8%
5067783 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.58 35.0 4.30e-01 93.9% 95.6%
4017507 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 44.0 4.56e-01 81.2% 82.9%
3927914 2484.1.1.212 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH 0.56 39.0 4.39e-01 91.7% 93.3%
3926597 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.55 48.0 4.11e-01 92.8% 80.4%
3930501 2484.5.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase 0.55 37.0 4.30e-01 93.9% 96.8%
3722236 7604.1.1.1 ↗ a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_N 0.54 40.0 4.45e-01 96.7% 99.3%
5081472 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 39.0 4.20e-01 74.0% 99.3%
3270960 2484.1.1.212 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH 0.54 35.0 4.19e-01 91.2% 99.2%
3700386 7534.1.1.1 ↗ a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf 0.53 42.0 3.62e-01 83.4% 83.7%
4185839 2007.1.13.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.53 39.0 4.19e-01 100.0% 89.7%
3616473 2484.1.1.99 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.53 44.0 4.29e-01 100.0% 81.5%
4433821 2007.1.13.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase 0.53 39.0 4.11e-01 100.0% 86.3%
3492560 2003.1.6.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 0.52 47.0 4.11e-01 98.9% 96.0%
3596902 2496.1.1.0 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.52 40.0 3.96e-01 81.8% 84.1%
4319241 2007.5.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › SASA 0.52 47.0 4.21e-01 100.0% 99.2%
4445151 2004.1.1.226 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.51 39.0 3.23e-01 77.9% 74.9%
5069204 7544.1.1.1 ↗ a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Glycos_transf_3 0.51 46.0 3.87e-01 100.0% 67.6%
4971175 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.51 29.0 3.75e-01 100.0% 97.1%
4624410 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.50 46.0 4.48e-01 100.0% 92.3%