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NC_028950.1__YP_009212965.1__AVU38_gp116__00116
Bact-VirNC_028950.1__YP_009212965.1__AVU38_gp116__00116
Identity
- Accession:
- NC_028950 ↗
- Kingdom:
- phage
Quality
73.9
mean pLDDT
Taxonomy
TaxID: 1585840
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-148
Domain cluster:
rep: NC_041911.1__YP_009598786.1__FDH28_gp093__00093__D20-161
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1i9gA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.59 | 30.0 | 3.96e-01 | 90.0% | 90.6% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.57 | 29.0 | 3.63e-01 | 90.0% | 80.6% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 24.0 | 3.28e-01 | 73.3% | 86.0% |
| 4a0tA03 | 2.60.320.30 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › | 0.52 | 27.0 | 3.07e-01 | 90.0% | 65.6% |
| 6rh8A02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 36.0 | 3.30e-01 | 84.2% | 57.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3971321 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.65 | 24.0 | 3.12e-01 | 93.3% | 55.1% |
| 4029616 | 306.9.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › MecA substrate binding domain › MecA substrate binding domain | 0.60 | 35.0 | 4.37e-01 | 95.8% | 100.0% |
| 4982290 | 11.1.1.15 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD | 0.59 | 27.0 | 3.34e-01 | 85.0% | 68.0% |
| 3642420 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.54 | 40.0 | 3.72e-01 | 100.0% | 62.0% |
| 3223111 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 35.0 | 3.81e-01 | 88.3% | 83.0% |
D2
high
residues 161-270
D3
high
residues 277-342
Domain cluster:
representative