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NC_028950.1__YP_009213013.1__AVU38_gp164__00164
Bact-VirNC_028950.1__YP_009213013.1__AVU38_gp164__00164
Identity
- Accession:
- NC_028950 ↗
- Kingdom:
- phage
Quality
66.0
mean pLDDT
Taxonomy
TaxID: 1585840
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-87
Domain cluster:
rep: scnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00149__D22-91
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k59A02 | 3.30.70.2250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif | 0.52 | 43.0 | 4.36e-01 | 89.6% | 98.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5044171 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.66 | 50.0 | 4.94e-01 | 100.0% | 77.1% |
| 4932824 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.66 | 51.0 | 5.23e-01 | 97.0% | 85.9% |
| 4947954 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.65 | 48.0 | 4.94e-01 | 100.0% | 83.1% |
| 5033794 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.60 | 46.0 | 4.66e-01 | 97.0% | 84.6% |
| 4081647 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.54 | 49.0 | 4.42e-01 | 100.0% | 81.1% |
| 3663219 | 4968.1.1.1 ↗ | a+b complex topology › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › DNA_pol_B_2 | 0.53 | 47.0 | 4.06e-01 | 98.5% | 75.2% |
| 3271731 | 10.12.1.52 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 | 0.52 | 46.0 | 2.96e-01 | 100.0% | 25.1% |
| 5029180 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 42.0 | 3.55e-01 | 97.0% | 77.6% |
| 4060282 | 4968.1.1.1 ↗ | a+b complex topology › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › DNA_pol_B_2 | 0.51 | 45.0 | 4.24e-01 | 98.5% | 88.7% |
| 3394772 | 304.7.1.1 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 | 0.50 | 42.0 | 3.95e-01 | 91.0% | 76.2% |
D2
medium
residues 111-178_211-230