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NC_028952.1__YP_009213136.1__AVV12_gp09__00009

Bact-Vir

NC_028952.1__YP_009213136.1__AVV12_gp09__00009

Identity

Accession:
NC_028952 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Siftrevirus› Streptomyces_phage_SF3

TaxID: 1690818

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-104
PDB
Domain cluster: rep: MW712719.1__QWY79639.1__SEA_PERSISTENCE_9__00009__D7-104
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.61 37.0 3.87e-01 70.7% 64.4%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.59 42.0 4.51e-01 84.8% 89.6%
3himA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 47.0 3.77e-01 89.1% 44.2%
1jvmB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 35.0 3.40e-01 79.3% 55.0%
4mo1A00 1.10.274.110 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.56 44.0 3.82e-01 84.8% 82.1%
4akgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.56 49.0 4.18e-01 100.0% 61.5%
8b2sA01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.56 50.0 4.21e-01 100.0% 67.5%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 44.0 4.55e-01 100.0% 92.0%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 48.0 4.23e-01 100.0% 68.4%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 43.0 4.25e-01 100.0% 80.8%
5g5gA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.53 39.0 4.01e-01 78.3% 92.2%
2i53A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 45.0 4.29e-01 100.0% 81.1%
1e91A00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.51 34.0 3.50e-01 76.1% 71.8%
2r44A03 1.10.8.80 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain 0.50 42.0 3.90e-01 92.4% 74.6%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 35.0 3.11e-01 72.8% 79.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590119 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.78 61.0 6.18e-01 100.0% 83.3%
4031309 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.72 63.0 6.44e-01 100.0% 96.7%
4031430 4275.1.1.1 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.71 63.0 6.05e-01 100.0% 84.8%
3938809 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.65 52.0 4.11e-01 90.2% 85.4%
4983838 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.60 43.0 4.28e-01 83.7% 71.0%
4947330 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.60 48.0 3.86e-01 90.2% 83.1%
3426060 191.1.1.6 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › COQ9 0.59 46.0 3.94e-01 87.0% 53.1%
3861597 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.56 45.0 4.23e-01 87.0% 96.5%
3934189 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.56 48.0 3.65e-01 93.5% 71.6%
3626373 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 47.0 4.73e-01 100.0% 93.7%
4999090 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.52 43.0 3.87e-01 97.8% 63.8%