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NC_028955.1__YP_009213671.1__AVU42_gp159__00159

Bact-Vir

NC_028955.1__YP_009213671.1__AVU42_gp159__00159

Identity

Accession:
NC_028955 ↗
Kingdom:
phage

Quality

56.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Haifavirus› Prochlorococcus_phage_P-TIM68

TaxID: 1542477

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-76
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.71 49.0 3.64e-01 71.1% 74.3%
3ismC01 1.25.40.240 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain 0.65 57.0 4.60e-01 100.0% 74.0%
7ncyB01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 49.0 4.20e-01 88.2% 50.4%
8fbcA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.65 54.0 3.47e-01 93.4% 90.3%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 52.0 4.83e-01 86.8% 95.7%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.64 52.0 4.97e-01 88.2% 88.6%
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 3.95e-01 72.4% 74.5%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.60 47.0 4.61e-01 85.5% 85.9%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.60 36.0 3.34e-01 73.7% 44.6%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 47.0 4.29e-01 86.8% 89.2%
1juqC00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 48.0 3.94e-01 94.7% 77.9%
7xuxB01 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.57 48.0 3.48e-01 98.7% 45.9%
4mozD00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 47.0 3.18e-01 96.1% 47.9%
2qeuB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.56 47.0 4.05e-01 100.0% 65.4%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 39.0 3.82e-01 73.7% 70.2%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.55 40.0 4.40e-01 80.3% 100.0%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 38.0 3.63e-01 73.7% 72.2%
2lsgA00 1.20.58.1280 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain 0.54 46.0 4.25e-01 94.7% 77.3%
6torA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 45.0 3.17e-01 93.4% 30.2%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 43.0 3.82e-01 96.1% 92.5%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 44.0 3.97e-01 100.0% 67.0%
2cwqA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.51 45.0 3.82e-01 98.7% 81.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4434935 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.88 61.0 4.81e-01 71.1% 39.3%
4970826 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.78 53.0 4.24e-01 72.4% 36.6%
5056276 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.75 57.0 4.42e-01 80.3% 55.0%
2141639 198.1.1.6 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › Saposin 0.71 50.0 4.30e-01 73.7% 93.2%
4542067 1101.1.1.5 ↗ alpha bundles › Uncharacterized protein LPG2271 › Uncharacterized protein LPG2271 › Uncharacterized protein LPG2271 › PF27081 0.69 44.0 3.92e-01 72.4% 46.7%
140810 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.67 48.0 3.67e-01 75.0% 76.0%
3375038 170.2.1.25 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF7746 0.66 52.0 5.23e-01 84.2% 90.7%
3390249 4003.1.1.0 ↗ alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins 0.64 44.0 4.49e-01 71.1% 73.3%
3651413 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.63 54.0 3.80e-01 96.1% 42.0%
4015329 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.61 45.0 4.11e-01 77.6% 75.8%
3959012 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.60 46.0 4.45e-01 93.4% 72.9%
4354865 611.3.1.16 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Nol11_C 0.60 51.0 4.79e-01 96.1% 94.7%
3196382 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 51.0 4.17e-01 98.7% 93.3%
3534780 5.1.4.233 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nol11_C 0.59 50.0 4.24e-01 96.1% 68.5%
4935348 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.58 39.0 3.89e-01 85.5% 66.3%
1103075 2002.1.1.76 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC 0.56 47.0 3.18e-01 96.1% 48.1%
4943605 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.54 41.0 3.00e-01 85.5% 46.2%
3610948 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 46.0 3.95e-01 98.7% 56.9%
3588951 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.53 30.0 3.37e-01 81.6% 71.7%
5027752 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 36.0 3.62e-01 92.1% 68.8%
4207849 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 3.66e-01 100.0% 81.8%
D2 medium residues 502-553
PDB
D3 medium residues 949-1006
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d5tA03 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.51 34.0 2.94e-01 70.7% 55.2%