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NC_028956.1__YP_009213788.1__AVV62_gp30__00030

Bact-Vir

Identity

Accession:: NC_028956 ↗
Kingdom:: phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mannheimia_phage_vB_MhS_1152AP2

TaxID: 1572747

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-58

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5anpA00	3.10.310.50	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 ›	0.81	55.0	3.92e-01	72.0%	26.2%
1j8yF01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.79	57.0	4.76e-01	78.0%	45.3%
1d2mA03	6.10.140.240	Special › Helix non-globular › Helix Hairpins ›	0.77	56.0	5.09e-01	78.0%	77.3%
3q1xA01	1.10.3130.10	Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1	0.76	55.0	3.99e-01	78.0%	29.5%
4oa3A00	3.10.310.50	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 ›	0.74	51.0	3.66e-01	74.0%	25.5%
2hjmA01	1.20.120.460	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like	0.72	52.0	4.38e-01	78.0%	46.5%
6tejB01	1.20.1560.10	Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain	0.69	56.0	3.50e-01	100.0%	16.2%
1li5A02	1.20.120.640	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	0.65	47.0	3.93e-01	80.0%	44.8%
3t0yA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.63	44.0	4.14e-01	78.0%	63.6%
1n5uA01	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.59	44.0	3.64e-01	86.0%	42.7%
2ra1A02	1.20.58.780	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	40.0	3.75e-01	82.0%	63.2%
4aaiA01	1.10.1220.150	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant ›	0.52	37.0	3.61e-01	80.0%	68.4%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4646165	4312.1.1.3 ↗	a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin	0.81	66.0	5.31e-01	86.0%	74.4%
4585524	4312.1.1.3 ↗	a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin	0.73	56.0	4.67e-01	86.0%	76.7%
3285620	4953.1.1.2 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C	0.70	49.0	4.42e-01	74.0%	54.3%
3327699	3443.1.1.0 ↗	alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain	0.70	52.0	5.23e-01	82.0%	86.0%
3972978	4953.1.1.0 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like	0.69	46.0	4.24e-01	72.0%	52.9%
3499466	3704.1.1.0 ↗	alpha superhelices › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain	0.66	47.0	2.52e-01	74.0%	3.2%
4399203	140.1.1.11 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1	0.62	43.0	3.08e-01	72.0%	23.9%
3987421	3843.1.1.0 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K	0.62	44.0	4.05e-01	80.0%	58.5%