←Back to structures
NC_028956.1__YP_009213817.1__AVV62_gp70__00059
Bact-VirNC_028956.1__YP_009213817.1__AVV62_gp70__00059
Identity
- Accession:
- NC_028956 ↗
- Kingdom:
- phage
Quality
87.1
mean pLDDT
Taxonomy
TaxID: 1572747
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-85
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05269.18 best | Phage_CII | 25.9 | 1.30e-05 | 94.9% | 67.0% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xwrC00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.76 | 65.0 | 6.64e-01 | 94.9% | 94.7% |
| 1lliA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 40.0 | 3.89e-01 | 74.4% | 76.4% |
| 8dtqA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.56 | 40.0 | 4.03e-01 | 78.2% | 78.0% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.72e-01 | 73.1% | 94.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976541 | 101.1.4.6 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII | 0.91 | 66.0 | 6.94e-01 | 74.4% | 84.3% |
| 4991883 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 42.0 | 3.77e-01 | 70.5% | 94.8% |
| 2572 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.58 | 37.0 | 4.00e-01 | 80.8% | 79.4% |
| 5031306 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.58 | 34.0 | 3.82e-01 | 70.5% | 80.0% |
| 3059487 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.57 | 41.0 | 4.00e-01 | 76.9% | 79.1% |
| 4941943 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.56 | 34.0 | 3.74e-01 | 78.2% | 78.3% |
| 5010215 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.56 | 33.0 | 3.64e-01 | 74.4% | 75.0% |
| 5028930 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.55 | 33.0 | 3.58e-01 | 74.4% | 75.0% |
| 5046761 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 32.0 | 3.54e-01 | 73.1% | 75.0% |
| 5079698 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.54 | 34.0 | 3.70e-01 | 79.5% | 81.7% |
| 3286027 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.53 | 33.0 | 3.66e-01 | 78.2% | 81.7% |
| 5003296 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.53 | 38.0 | 3.43e-01 | 75.6% | 71.8% |
| 4026387 | 3403.1.1.6 ↗ | alpha bundles › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 › SF3a60_bindingd,SF3A3 | 0.52 | 43.0 | 2.99e-01 | 93.6% | 64.7% |
| 169889 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.52 | 39.0 | 3.53e-01 | 83.3% | 77.2% |
| 3345803 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.51 | 38.0 | 3.74e-01 | 79.5% | 82.4% |