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NC_028956.1__YP_009213819.1__AVV62_gp68__00061

Bact-Vir

NC_028956.1__YP_009213819.1__AVV62_gp68__00061

Identity

Accession:
NC_028956 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mannheimia_phage_vB_MhS_1152AP2

TaxID: 1572747

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-120
PDB
Domain cluster: rep: IMGVR_UViG_3300009680_000356-3300009680-Ga0123335_10190514__D10-91
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04492.20 best Phage_rep_O 84.3 9.80e-24 100.0% 89.5%
CATH (85)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.93 84.0 8.37e-01 100.0% 92.4%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 58.0 6.14e-01 81.1% 87.2%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 4.89e-01 83.3% 51.2%
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 6.39e-01 84.4% 100.0%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 57.0 6.10e-01 81.1% 88.3%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 55.0 4.59e-01 86.7% 44.4%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 59.0 5.81e-01 91.1% 75.8%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 5.94e-01 80.0% 91.4%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.77 61.0 4.84e-01 85.6% 56.7%
1o3sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 55.0 6.25e-01 75.6% 100.0%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 58.0 5.98e-01 80.0% 84.5%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 55.0 4.87e-01 86.7% 53.5%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.75 60.0 4.37e-01 83.3% 90.5%
1lvaA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 49.0 5.81e-01 78.9% 100.0%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 4.73e-01 87.8% 50.0%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 56.0 5.93e-01 80.0% 88.7%
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 5.18e-01 85.6% 70.8%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 57.0 5.89e-01 80.0% 85.9%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 57.0 5.84e-01 80.0% 87.2%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 53.0 4.72e-01 86.7% 53.2%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.75 58.0 6.05e-01 81.1% 98.8%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.75 54.0 6.06e-01 77.8% 97.1%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 5.70e-01 82.2% 92.6%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 59.0 6.17e-01 84.4% 96.4%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 4.60e-01 87.8% 49.3%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 5.99e-01 81.1% 95.1%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 5.70e-01 82.2% 90.4%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.65e-01 80.0% 84.8%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 64.0 6.28e-01 95.6% 86.7%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.79e-01 80.0% 88.1%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.87e-01 80.0% 90.1%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 48.0 4.84e-01 82.2% 66.7%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 56.0 5.94e-01 80.0% 93.7%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 56.0 5.40e-01 81.1% 76.2%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 4.63e-01 87.8% 51.9%
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.72 42.0 4.94e-01 80.0% 85.2%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.69e-01 82.2% 89.7%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 6.01e-01 83.3% 97.3%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.80e-01 80.0% 92.5%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 5.71e-01 80.0% 93.6%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 49.0 5.13e-01 83.3% 79.0%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 5.70e-01 80.0% 91.0%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.70 57.0 4.71e-01 86.7% 51.9%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 5.47e-01 82.2% 96.9%
2p6rA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.70 55.0 4.10e-01 83.3% 91.7%
1xdsB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 43.0 4.26e-01 83.3% 59.8%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 50.0 4.98e-01 84.4% 72.0%
3go5A04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 5.48e-01 76.7% 100.0%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 4.80e-01 83.3% 70.8%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 60.0 6.12e-01 93.3% 100.0%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 4.98e-01 83.3% 72.3%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 5.50e-01 81.1% 92.7%
2ns0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.59e-01 83.3% 96.4%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.72e-01 90.0% 97.8%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.76e-01 83.3% 73.3%
4bgdA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.93e-01 75.6% 94.4%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 48.0 5.21e-01 78.9% 90.7%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.91e-01 81.1% 71.4%
2vlaA03 1.10.10.2090 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 52.0 4.69e-01 82.2% 87.5%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.85e-01 84.4% 79.3%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 5.12e-01 78.9% 98.4%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 59.0 5.05e-01 97.8% 83.5%
3jw4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.16e-01 91.1% 54.1%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.65 35.0 4.44e-01 82.2% 92.2%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 5.36e-01 93.3% 87.2%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 42.0 4.79e-01 72.2% 98.3%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 57.0 5.70e-01 97.8% 92.6%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 4.83e-01 90.0% 76.7%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 42.0 4.36e-01 80.0% 71.8%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 43.0 4.47e-01 80.0% 75.6%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.46e-01 86.7% 74.2%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.60 48.0 4.90e-01 88.9% 87.6%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.53e-01 77.8% 82.6%
1zybA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 51.0 3.77e-01 96.7% 37.2%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.27e-01 83.3% 75.3%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.58 43.0 4.38e-01 78.9% 93.2%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.57 42.0 4.16e-01 78.9% 74.5%
2f5jB00 1.10.274.30 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › MRG domain 0.56 48.0 4.05e-01 97.8% 71.7%
4p55B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.07e-01 81.1% 100.0%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 37.0 4.11e-01 93.3% 98.6%
2dceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 4.10e-01 80.0% 100.0%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 40.0 4.24e-01 91.1% 98.7%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 41.0 4.28e-01 94.4% 97.5%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.52 38.0 3.30e-01 80.0% 66.0%
2becA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 37.0 3.07e-01 93.3% 39.2%
ECOD (98)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979451 101.1.2.241 ↗ alpha arrays › HTH › HTH › winged helix domain › Phage_rep_O 0.90 85.0 7.99e-01 100.0% 84.8%
4558680 101.1.2.807 ↗ alpha arrays › HTH › HTH › winged helix domain › MC6 0.84 58.0 6.16e-01 77.8% 80.0%
3398923 101.1.2.248 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.84 62.0 6.57e-01 81.1% 86.3%
3404553 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 59.0 6.81e-01 76.7% 100.0%
3390278 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 58.0 6.79e-01 76.7% 100.0%
197596 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 59.0 6.11e-01 82.2% 78.8%
5073913 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 57.0 6.54e-01 82.2% 100.0%
3390907 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 60.0 6.20e-01 81.1% 82.1%
3224625 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.81 54.0 5.89e-01 76.7% 82.7%
5039794 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 54.0 5.71e-01 81.1% 77.5%
3413561 101.1.2.248 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.80 61.0 5.83e-01 82.2% 69.5%
3554755 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 59.0 6.39e-01 76.7% 98.7%
3740394 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 55.0 5.00e-01 80.0% 54.6%
3997738 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 57.0 5.90e-01 88.9% 80.0%
5002881 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 71.0 6.86e-01 97.8% 96.0%
5077428 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 59.0 5.91e-01 81.1% 77.8%
5055754 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 56.0 5.36e-01 81.1% 64.8%
3814573 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 5.69e-01 81.1% 81.0%
3583002 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.78 57.0 6.42e-01 77.8% 98.6%
4938492 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 53.0 5.58e-01 81.1% 78.8%
5038818 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.77 53.0 3.62e-01 75.6% 22.5%
4941477 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 63.0 6.04e-01 85.6% 79.0%
5030996 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 59.0 5.34e-01 81.1% 84.2%
3943865 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 60.0 5.39e-01 82.2% 66.7%
3706397 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 50.0 5.77e-01 74.4% 93.8%
4988663 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.76 54.0 5.58e-01 85.6% 77.6%
3555783 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.76 53.0 5.29e-01 76.7% 69.9%
3279254 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 56.0 5.78e-01 87.8% 81.2%
4024039 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 59.0 5.63e-01 82.2% 81.9%
4602045 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 59.0 5.98e-01 81.1% 81.1%
5022256 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 56.0 5.66e-01 82.2% 76.7%
3401123 101.1.2.248 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.76 57.0 6.20e-01 78.9% 96.0%
3217621 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.76 56.0 6.32e-01 80.0% 100.0%
4933063 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.76 58.0 6.00e-01 81.1% 84.7%
3930465 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 6.10e-01 91.1% 96.2%
3741065 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 64.0 6.29e-01 91.1% 87.4%
4220501 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.75 59.0 5.80e-01 82.2% 82.1%
4932334 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.75 57.0 3.46e-01 80.0% 14.2%
3550852 101.1.2.86 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.75 61.0 5.91e-01 86.7% 80.0%
3497894 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.75 53.0 5.52e-01 77.8% 79.5%
4966021 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 58.0 6.14e-01 82.2% 95.0%
5034572 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.75 58.0 5.81e-01 82.2% 81.1%
5068813 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 58.0 5.61e-01 82.2% 88.0%
4966822 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 50.0 4.67e-01 70.0% 57.3%
5062049 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.74 60.0 4.75e-01 85.6% 48.2%
3398316 101.1.2.248 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.74 55.0 5.68e-01 82.2% 83.5%
4997427 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 55.0 5.57e-01 84.4% 78.9%
3500923 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.74 55.0 5.87e-01 78.9% 90.0%
4928210 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 58.0 5.70e-01 83.3% 100.0%
3167815 101.1.2.251 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6581 0.74 48.0 5.48e-01 76.7% 92.3%
4034554 101.1.2.142 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.74 56.0 5.90e-01 80.0% 91.3%
3627133 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.74 58.0 4.41e-01 82.2% 40.0%
5073598 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.74 56.0 5.66e-01 80.0% 84.4%
4991609 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.73 58.0 5.80e-01 82.2% 84.4%
3935822 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.73 56.0 5.64e-01 82.2% 80.0%
4997786 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 54.0 5.55e-01 80.0% 82.4%
5064577 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 52.0 4.63e-01 80.0% 52.3%
3593805 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 3.89e-01 88.9% 21.3%
4984063 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 56.0 5.58e-01 83.3% 78.9%
4028118 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 5.78e-01 92.2% 81.9%
3895346 101.1.2.575 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25894 0.71 60.0 5.58e-01 88.9% 87.3%
4991879 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 53.0 5.09e-01 80.0% 81.0%
4456623 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.71 55.0 4.28e-01 82.2% 41.1%
4969033 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 4.82e-01 93.3% 48.3%
5058140 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.71 56.0 5.39e-01 88.9% 75.0%
4600309 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.71 55.0 5.32e-01 82.2% 75.0%
5025299 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 52.0 4.81e-01 80.0% 60.9%
5040315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 51.0 5.18e-01 80.0% 76.7%
3780237 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.70 64.0 5.04e-01 100.0% 84.3%
3268092 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.49e-01 95.6% 78.3%
5072473 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 49.0 5.20e-01 76.7% 82.5%
3532208 7558.1.1.10 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.70 55.0 4.26e-01 82.2% 40.5%
4231800 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.39e-01 82.2% 81.1%
4168969 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.70 62.0 4.22e-01 94.4% 54.5%
5035389 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 5.85e-01 88.9% 91.8%
3691906 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 54.0 5.20e-01 81.1% 94.0%
5081885 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 5.42e-01 80.0% 87.5%
4232234 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.70 61.0 4.70e-01 94.4% 83.2%
4963932 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 54.0 5.53e-01 82.2% 85.9%
3442533 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.69 57.0 5.20e-01 88.9% 69.2%
3995560 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 5.34e-01 81.1% 87.8%
5028866 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 58.0 5.62e-01 98.9% 80.0%
4975263 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.69 54.0 5.61e-01 84.4% 88.2%
5045022 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 51.0 4.62e-01 80.0% 58.3%
3713972 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.27e-01 91.1% 74.8%
4988334 101.1.2.913 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.68 50.0 5.08e-01 80.0% 77.8%
3820802 101.1.2.529 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7599 0.68 54.0 5.03e-01 84.4% 75.5%
4149682 101.1.2.787 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27146, PF27262 0.68 53.0 4.29e-01 83.3% 57.1%
5029501 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 61.0 5.19e-01 97.8% 72.1%
3972365 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 4.63e-01 95.6% 87.0%
3881443 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.67 56.0 3.87e-01 90.0% 55.2%
3805792 101.1.2.137 ↗ alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.67 51.0 5.35e-01 81.1% 91.3%
5075915 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 49.0 5.08e-01 80.0% 83.5%
4601931 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.41e-01 100.0% 83.0%
4626680 101.1.2.170 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_51 0.65 46.0 4.34e-01 84.4% 60.9%
3422892 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.65 53.0 3.95e-01 88.9% 45.8%
3931554 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.44e-01 93.3% 56.0%
4030863 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.59 46.0 4.91e-01 87.8% 100.0%
D2 high residues 191-286
PDB
Domain cluster: rep: JQ177065.1__AFC22466.1__ZF40_0014__00014__D163-250
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kewA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.62 34.0 3.65e-01 97.9% 61.9%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.60 46.0 4.21e-01 81.2% 78.2%
5vhgA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 48.0 4.22e-01 93.8% 85.3%
1jkwA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 37.0 3.67e-01 84.4% 63.4%
3vkgB04 1.10.8.710 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain 0.55 49.0 4.57e-01 100.0% 99.2%
1fx0A03 1.20.150.20 Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain 0.55 46.0 4.20e-01 100.0% 69.0%
1gakA00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.55 44.0 3.94e-01 87.5% 94.9%
1ad6A00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 45.0 3.68e-01 91.7% 85.4%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 38.0 3.59e-01 100.0% 58.7%
7b7tA01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 38.0 3.28e-01 75.0% 85.7%
2a7oA00 1.10.1740.100 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain 0.51 39.0 3.93e-01 86.5% 82.0%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 30.0 3.36e-01 100.0% 74.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3390921 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.62 43.0 4.69e-01 93.8% 86.3%
3699966 148.1.3.10 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 0.61 49.0 4.74e-01 100.0% 76.4%
3946717 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.61 38.0 4.26e-01 89.6% 84.3%
3895555 142.1.1.5 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.60 44.0 4.70e-01 96.9% 92.5%
4025457 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.55 36.0 3.84e-01 100.0% 75.3%
3580700 148.1.3.10 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 0.54 48.0 4.66e-01 97.9% 100.0%
4180635 5067.1.1.1 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ACR_tran 0.54 44.0 3.36e-01 90.6% 39.1%
2843 101.1.10.8 ↗ alpha arrays › HTH › HTH › Cyclin-like › CDK5_activator 0.51 43.0 3.75e-01 97.9% 60.4%
4929712 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.51 40.0 3.10e-01 85.4% 48.6%
4890990 2004.1.1.181 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 0.50 40.0 3.33e-01 87.5% 71.5%
3946182 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.50 31.0 3.26e-01 85.4% 65.6%