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NC_028957.1__YP_009213989.1__AVV66_gp285__00152

Bact-Vir

NC_028957.1__YP_009213989.1__AVV66_gp285__00152

Identity

Accession:
NC_028957 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Gaprivervirus› Escherichia_phage_vB_EcoM_VR26

TaxID: 1567029

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-119
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.79 71.0 5.96e-01 100.0% 85.6%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.64 52.0 5.01e-01 88.5% 80.0%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 55.0 4.96e-01 100.0% 90.0%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 47.0 4.60e-01 100.0% 75.5%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 50.0 4.48e-01 95.4% 96.0%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.58 47.0 4.80e-01 95.4% 94.0%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 46.0 3.28e-01 85.1% 80.8%
3w7tA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.58 43.0 3.20e-01 80.5% 80.6%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 43.0 3.15e-01 80.5% 82.5%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 44.0 3.21e-01 83.9% 79.8%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.56 45.0 3.72e-01 88.5% 86.4%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 4.15e-01 100.0% 79.1%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 4.28e-01 100.0% 82.8%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 44.0 3.64e-01 87.4% 67.8%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.86e-01 92.0% 96.3%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.63e-01 85.1% 61.9%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 4.12e-01 95.4% 95.3%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.59e-01 83.9% 78.0%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 43.0 3.20e-01 86.2% 78.9%
2cwsA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.20e-01 87.4% 59.9%
3u1xA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 42.0 3.17e-01 86.2% 75.6%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.53e-01 83.9% 82.3%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.97e-01 81.6% 83.7%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 42.0 4.24e-01 100.0% 84.3%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 39.0 3.45e-01 79.3% 75.8%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 42.0 3.37e-01 86.2% 76.9%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 42.0 3.78e-01 86.2% 84.9%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.52 42.0 3.66e-01 88.5% 86.7%
4ccdA03 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 41.0 3.18e-01 85.1% 76.0%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.69e-01 75.9% 93.6%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.74e-01 95.4% 93.0%
1qu0C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.18e-01 83.9% 70.5%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.91e-01 86.2% 68.6%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.52 39.0 4.04e-01 80.5% 90.2%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.51e-01 86.2% 77.1%
1okqA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.23e-01 85.1% 73.1%
1oq1B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.97e-01 83.9% 77.6%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.51 33.0 3.51e-01 82.8% 77.0%
8a7dC01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 2.88e-01 80.5% 58.8%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.50 44.0 3.88e-01 100.0% 82.8%
1d2sA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.41e-01 100.0% 47.6%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1833882 9.4.1.3 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.64 52.0 5.14e-01 88.5% 86.0%
5063612 4252.1.1.10 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.62 54.0 4.29e-01 100.0% 82.1%
4945114 4252.1.1.10 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.62 54.0 4.22e-01 100.0% 78.0%
164160 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 47.0 4.47e-01 100.0% 69.6%
3877833 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 46.0 4.82e-01 100.0% 88.7%
4960280 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 4.43e-01 100.0% 72.6%
3388895 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.59 45.0 4.16e-01 100.0% 63.6%
5023931 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 34.0 3.70e-01 81.6% 70.0%
3247669 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 44.0 3.11e-01 80.5% 38.6%
3235531 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.57 37.0 2.75e-01 100.0% 23.7%
3685044 633.23.1.12 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 0.57 42.0 3.07e-01 100.0% 26.9%
5039096 274.1.1.67 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7289 0.56 40.0 3.66e-01 74.7% 70.4%
5046585 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.56 37.0 4.20e-01 86.2% 92.3%
5033093 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.95e-01 82.8% 74.8%
3710430 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 43.0 3.41e-01 82.8% 45.1%
3593728 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 47.0 4.05e-01 100.0% 94.0%
5035423 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 45.0 4.60e-01 89.7% 90.6%
3231485 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 44.0 3.51e-01 83.9% 63.1%
3970772 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.99e-01 87.4% 89.5%
3229102 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 35.0 2.61e-01 100.0% 23.2%
4031750 274.1.1.25 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.54 48.0 4.61e-01 100.0% 92.9%
3436173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 40.0 2.72e-01 80.5% 39.3%
3399870 219.1.1.24 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.52 45.0 3.38e-01 96.6% 85.8%
3427234 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 40.0 2.90e-01 81.6% 47.3%
3221612 12.3.1.42 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.52 40.0 2.93e-01 80.5% 53.3%
3228574 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 39.0 2.85e-01 80.5% 37.4%
3468148 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 40.0 3.08e-01 86.2% 36.4%
4827216 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.52 42.0 4.15e-01 86.2% 96.7%
3224579 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 44.0 2.97e-01 92.0% 26.1%
3243587 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 39.0 2.68e-01 80.5% 35.2%
3212555 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.51 38.0 3.32e-01 100.0% 52.3%
1070881 9.1.1.26 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF4847 0.51 42.0 3.67e-01 95.4% 92.4%
3996732 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 39.0 2.70e-01 82.8% 28.5%
4965842 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.50 39.0 2.80e-01 85.1% 49.6%
3225057 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.50 37.0 2.94e-01 100.0% 37.3%