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NC_028959.1__YP_009214204.1__PHIMMP03_20024__00024
Bact-VirNC_028959.1__YP_009214204.1__PHIMMP03_20024__00024
Identity
- Accession:
- NC_028959 ↗
- Kingdom:
- phage
Quality
85.4
mean pLDDT
Taxonomy
TaxID: 1582157
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-96
Domain cluster:
rep: pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00028__D17-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24032.2 best | YQBQ | 71.6 | 1.10e-19 | 77.4% | 22.4% |
D2
high
residues 209-265
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24032.2 best | YQBQ | 67.7 | 1.60e-18 | 100.0% | 19.4% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wruA03 | 3.30.1920.10 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold | 0.81 | 61.0 | 6.17e-01 | 100.0% | 82.1% |
| 6k9nA01 | 3.30.200.60 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Peptidase C65 Otubain, subdomain 1 | 0.57 | 39.0 | 3.38e-01 | 71.9% | 45.6% |
| 2jaqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 49.0 | 3.44e-01 | 100.0% | 100.0% |
| 1bqbA01 | 3.10.170.10 | Alpha Beta › Roll › Elastase; domain 1 › | 0.56 | 45.0 | 3.48e-01 | 100.0% | 77.3% |
| 5zb2B00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.55 | 46.0 | 4.13e-01 | 100.0% | 66.7% |
| 5cnxA01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.54 | 39.0 | 3.10e-01 | 96.5% | 36.0% |
| 1vg0A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 46.0 | 3.19e-01 | 100.0% | 93.2% |
| 2h3hA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 44.0 | 3.40e-01 | 100.0% | 80.4% |
| 3v46A00 | 3.40.50.11990 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › RNA polymerase II accessory factor, Cdc73 C-terminal domain | 0.53 | 46.0 | 3.38e-01 | 100.0% | 95.6% |
| 7x2pA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 47.0 | 3.16e-01 | 100.0% | 28.3% |
| 4dcuA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.45e-01 | 100.0% | 97.9% |
| 1vpaA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.52 | 45.0 | 3.09e-01 | 100.0% | 41.2% |
| 2dafA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 32.0 | 3.02e-01 | 91.2% | 46.1% |
| 4io2A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 43.0 | 3.31e-01 | 96.5% | 67.4% |
| 2ju5A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 43.0 | 3.45e-01 | 98.2% | 84.7% |
| 3p42A01 | 3.10.20.700 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 35.0 | 2.99e-01 | 70.2% | 85.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4049733 | 3071.1.1.8 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › YQBQ | 0.92 | 83.0 | 7.92e-01 | 100.0% | 84.6% |
| 4929759 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.85 | 70.0 | 4.97e-01 | 100.0% | 31.9% |
| 119096 | 3071.1.1.0 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins | 0.81 | 61.0 | 6.17e-01 | 100.0% | 82.1% |
| 5002661 | 3071.1.1.0 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins | 0.78 | 69.0 | 6.62e-01 | 100.0% | 89.2% |
| 3573688 | 3071.1.1.6 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › Phage-tail_3 | 0.77 | 68.0 | 6.08e-01 | 100.0% | 72.5% |
| 3980575 | 3071.1.1.0 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins | 0.77 | 67.0 | 6.33e-01 | 100.0% | 85.7% |
| 4889790 | 3071.1.1.7 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 | 0.76 | 68.0 | 4.83e-01 | 100.0% | 40.4% |
| 4957567 | 3071.1.1.0 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins | 0.71 | 61.0 | 5.80e-01 | 100.0% | 87.1% |
| 4548405 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.59 | 49.0 | 3.65e-01 | 93.0% | 75.9% |
| 5032747 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.57 | 35.0 | 2.77e-01 | 100.0% | 30.4% |
| 1887419 | 2003.1.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N | 0.56 | 40.0 | 2.82e-01 | 75.4% | 100.0% |
| 3010513 | 7579.1.1.195 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF7379 | 0.53 | 47.0 | 3.15e-01 | 100.0% | 27.9% |
| 4929132 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.53 | 43.0 | 3.65e-01 | 91.2% | 54.7% |
| 3225196 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 41.0 | 3.49e-01 | 100.0% | 65.7% |
D3
high
residues 365-514
Domain cluster:
rep: KY940711.1__ARQ95328.1__X__00096__D842-972
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01832.26 best | Glucosaminidase | 49.2 | 1.20e-12 | 79.3% | 91.9% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qdnA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.80 | 60.0 | 6.79e-01 | 77.3% | 100.0% |
| 4kt3A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.78 | 60.0 | 6.24e-01 | 79.3% | 95.0% |
| 153lA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.77 | 59.0 | 5.47e-01 | 78.7% | 78.4% |
| 3fi7A01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.75 | 60.0 | 6.40e-01 | 82.7% | 98.5% |
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.72 | 54.0 | 5.02e-01 | 76.7% | 98.9% |
| 2zycA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.71 | 46.0 | 5.44e-01 | 78.0% | 93.4% |
| 1vw4801 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.66 | 25.0 | 3.42e-01 | 81.3% | 65.8% |
| 7x0fB01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.62 | 29.0 | 4.14e-01 | 87.3% | 93.2% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.61 | 32.0 | 4.24e-01 | 82.0% | 96.2% |
| 1ltmA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.61 | 46.0 | 4.42e-01 | 78.7% | 87.9% |
| 4at7B01 | 1.10.1410.40 | Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › | 0.55 | 40.0 | 4.26e-01 | 93.3% | 86.5% |
| 1qmgA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 41.0 | 3.38e-01 | 84.0% | 93.2% |
| 5mswA01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.53 | 31.0 | 3.81e-01 | 81.3% | 94.6% |
| 4e80C01 | 1.10.1410.10 | Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › | 0.51 | 43.0 | 3.89e-01 | 94.0% | 91.2% |
| 1kxpD03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.50 | 26.0 | 3.25e-01 | 90.7% | 80.7% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029852 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.91 | 72.0 | 7.04e-01 | 81.3% | 91.3% |
| 3989161 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.90 | 72.0 | 6.82e-01 | 81.3% | 80.0% |
| 1693577 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.86 | 72.0 | 6.13e-01 | 86.0% | 70.2% |
| 1891407 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.84 | 71.0 | 5.78e-01 | 86.7% | 76.8% |
| 1406787 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.80 | 60.0 | 6.79e-01 | 77.3% | 100.0% |
| 3388213 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.80 | 61.0 | 5.34e-01 | 78.0% | 95.7% |
| 3980563 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.80 | 60.0 | 5.93e-01 | 78.0% | 96.2% |
| 4680920 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.79 | 60.0 | 6.01e-01 | 78.0% | 97.4% |
| 4443068 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.79 | 65.0 | 5.59e-01 | 86.0% | 72.0% |
| 1086527 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.78 | 60.0 | 6.24e-01 | 79.3% | 95.0% |
| 4007762 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.76 | 57.0 | 5.45e-01 | 77.3% | 86.1% |
| 3285050 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.75 | 58.0 | 5.58e-01 | 79.3% | 98.2% |
| 3590542 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.75 | 61.0 | 5.96e-01 | 84.0% | 96.9% |
| 3508049 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.75 | 57.0 | 5.66e-01 | 78.7% | 93.5% |
| 3589177 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.72 | 67.0 | 6.52e-01 | 98.0% | 96.3% |
| 3728943 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.69 | 53.0 | 5.05e-01 | 78.7% | 85.9% |
| 4520768 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.67 | 61.0 | 5.87e-01 | 96.7% | 94.1% |
| 3468538 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 29.0 | 3.15e-01 | 82.0% | 59.2% |
| None | — | 0.51 | 35.0 | 3.62e-01 | 88.0% | 73.6% | |
| 3420861 | 5076.2.1.10 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 | 0.50 | 38.0 | 3.09e-01 | 78.0% | 76.2% |
D4
high
residues 524-654
Domain cluster:
rep: MF001361.1__ASZ77376.1__X__00001__D369-485
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05382.20 best | Amidase_5 | 23.0 | 9.10e-05 | 87.0% | 64.8% |
| PF00877.26 | NLPC_P60 | 103.7 | 7.10e-30 | 85.5% | 96.2% |
D5
medium
residues 99-180
Domain cluster:
rep: IMGVR_UViG_3300010356_003928-3300010356-Ga0116237_1000366617__D1016-1097
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24032.2 best | YQBQ | 103.3 | 2.40e-29 | 100.0% | 27.9% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gr5A01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.78 | 67.0 | 6.71e-01 | 100.0% | 91.8% |
| 1wruA02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.77 | 70.0 | 6.87e-01 | 98.8% | 95.5% |
| 3adyA00 | 3.55.50.60 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › DotD protein | 0.75 | 68.0 | 6.32e-01 | 100.0% | 81.4% |
| 1k28D02 | 3.55.50.20 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.75 | 67.0 | 6.57e-01 | 98.8% | 98.9% |
| 4m0nA02 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.75 | 61.0 | 6.32e-01 | 95.1% | 96.1% |
| 1zzvA01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.74 | 61.0 | 6.36e-01 | 93.9% | 100.0% |
| 4jtmA00 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.72 | 63.0 | 6.36e-01 | 96.3% | 97.5% |
| 4e9jB01 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.72 | 61.0 | 5.16e-01 | 96.3% | 55.8% |
| 4uhvA02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.71 | 63.0 | 6.11e-01 | 100.0% | 91.3% |
| 7pmpA01 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.68 | 55.0 | 5.78e-01 | 92.7% | 100.0% |
| 3ov5A00 | 3.55.50.70 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.66 | 56.0 | 5.65e-01 | 97.6% | 96.4% |
| 1itpA00 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.65 | 34.0 | 3.54e-01 | 82.9% | 53.2% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.61 | 41.0 | 3.97e-01 | 70.7% | 100.0% |
| 2dgrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 33.0 | 3.66e-01 | 82.9% | 67.2% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.58 | 42.0 | 3.30e-01 | 78.0% | 68.5% |
| 4fppA02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.57 | 45.0 | 3.85e-01 | 86.6% | 73.0% |
| 4nx9A02 | 2.60.40.4390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 42.0 | 3.76e-01 | 100.0% | 54.5% |
| 4qpkB02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.55 | 44.0 | 3.78e-01 | 87.8% | 71.6% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 4.13e-01 | 93.9% | 82.6% |
| 2wpvE00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 42.0 | 2.93e-01 | 90.2% | 39.3% |
| 1fs7A01 | 1.10.1130.10 | Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A | 0.51 | 41.0 | 2.91e-01 | 96.3% | 88.6% |
| 3qktD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 40.0 | 2.77e-01 | 89.0% | 100.0% |
| 2pt7G02 | 3.30.1370.180 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.50 | 38.0 | 4.10e-01 | 95.1% | 100.0% |
| 4k3bA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.50 | 38.0 | 4.12e-01 | 98.8% | 100.0% |
| 4hziB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 42.0 | 3.06e-01 | 95.1% | 90.2% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4200887 | 3070.1.1.17 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › YQBQ | 0.97 | 93.0 | 9.01e-01 | 100.0% | 95.6% |
| 4988104 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.89 | 83.0 | 8.06e-01 | 100.0% | 95.6% |
| 3966286 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.83 | 70.0 | 7.29e-01 | 98.8% | 100.0% |
| 4809347 | 3070.1.1.16 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › PF30637 | 0.82 | 71.0 | 7.14e-01 | 100.0% | 93.9% |
| 3974036 | 3070.1.1.10 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › T3S_SPI-1_N0 | 0.80 | 67.0 | 6.97e-01 | 98.8% | 100.0% |
| 185652 | 3070.1.1.4 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN | 0.79 | 70.0 | 5.96e-01 | 100.0% | 61.7% |
| 4008875 | 3070.1.1.4 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN | 0.79 | 66.0 | 6.82e-01 | 98.8% | 100.0% |
| 3948879 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.78 | 66.0 | 6.83e-01 | 97.6% | 100.0% |
| 4048982 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.78 | 68.0 | 6.89e-01 | 100.0% | 97.5% |
| 3977381 | 3070.1.1.2 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD | 0.78 | 66.0 | 6.61e-01 | 100.0% | 90.6% |
| 1815424 | 3070.1.1.4 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN | 0.78 | 65.0 | 6.80e-01 | 97.6% | 100.0% |
| 3503726 | 3070.1.1.8 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › DotD | 0.77 | 68.0 | 6.90e-01 | 100.0% | 98.8% |
| 5002751 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.77 | 68.0 | 6.79e-01 | 100.0% | 94.1% |
| 4889789 | 3070.1.1.16 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › PF30637 | 0.77 | 68.0 | 6.69e-01 | 100.0% | 93.0% |
| 3970829 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.77 | 69.0 | 6.76e-01 | 100.0% | 93.3% |
| 3981376 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.76 | 63.0 | 6.56e-01 | 98.8% | 100.0% |
| 146928 | 3070.1.1.8 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › DotD | 0.75 | 68.0 | 6.46e-01 | 100.0% | 86.5% |
| 3163777 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.74 | 60.0 | 6.14e-01 | 96.3% | 91.3% |
| 3967139 | 3070.1.1.11 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 | 0.73 | 62.0 | 6.26e-01 | 96.3% | 96.2% |
| 3972068 | 3070.1.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins | 0.72 | 63.0 | 6.17e-01 | 97.6% | 91.1% |
| 4241517 | 3070.1.1.6 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › TcpQ | 0.71 | 59.0 | 6.02e-01 | 93.9% | 100.0% |
| 1070142 | 3070.1.1.11 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 | 0.69 | 60.0 | 6.08e-01 | 96.3% | 97.5% |
| 1833073 | 3070.1.1.11 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 | 0.69 | 57.0 | 5.79e-01 | 96.3% | 93.9% |
| 2883219 | 3070.1.1.11 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 | 0.68 | 55.0 | 5.37e-01 | 92.7% | 82.2% |
| 2323881 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.66 | 32.0 | 3.78e-01 | 97.6% | 66.7% |
| 5080958 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.61 | 44.0 | 4.65e-01 | 86.6% | 84.0% |
| 5039588 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.59 | 43.0 | 4.59e-01 | 86.6% | 90.0% |
| 3289385 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.57 | 28.0 | 3.38e-01 | 98.8% | 68.0% |
| 4126343 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.56 | 48.0 | 4.29e-01 | 96.3% | 75.0% |
| 4096826 | 3019.1.1.1 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN | 0.56 | 40.0 | 3.68e-01 | 100.0% | 57.3% |
| 5004889 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.55 | 44.0 | 3.15e-01 | 89.0% | 54.7% |
| 4560753 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.55 | 48.0 | 4.28e-01 | 96.3% | 74.8% |
| 3810358 | 3012.1.1.3 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › S6PP | 0.52 | 38.0 | 3.99e-01 | 86.6% | 86.7% |
| 5060556 | 3016.1.1.5 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SHMT | 0.52 | 37.0 | 2.87e-01 | 73.2% | 64.1% |
| 3252212 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.51 | 39.0 | 4.09e-01 | 87.8% | 90.7% |
| 5049113 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.51 | 40.0 | 3.23e-01 | 91.5% | 91.9% |
| 4027193 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 45.0 | 4.37e-01 | 98.8% | 98.9% |
D6
medium
residues 182-202_268-332
Domain cluster:
rep: IMGVR_UViG_3300012973_000622-3300012973-Ga0123351_100067239__D180-201_263-320
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24032.2 best | YQBQ | 57.9 | 1.50e-15 | 67.4% | 18.4% |