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NC_028983.1__YP_009216007.1__AVV46_gp009__00009

Bact-Vir

NC_028983.1__YP_009216007.1__AVV46_gp009__00009

Identity

Accession:
NC_028983 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Siminovitchvirus› Bacillus_phage_Shanette

TaxID: 1296656

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 42-109
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.76 56.0 5.13e-01 77.9% 60.2%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.76 66.0 6.28e-01 97.1% 93.8%
4j7zF00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.75 48.0 4.29e-01 97.1% 46.8%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 58.0 5.97e-01 91.2% 87.7%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.71 57.0 4.71e-01 100.0% 50.0%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 54.0 4.01e-01 100.0% 31.7%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 56.0 5.49e-01 91.2% 81.1%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.69 57.0 5.07e-01 91.2% 68.0%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 57.0 4.68e-01 94.1% 58.9%
3cerC01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 48.0 3.88e-01 97.1% 41.4%
4nqfA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.65 49.0 3.89e-01 82.4% 38.6%
1zeeA01 1.20.58.600 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 55.0 4.65e-01 98.5% 66.1%
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.64 54.0 4.64e-01 95.6% 60.2%
3hi0A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 47.0 3.95e-01 97.1% 47.0%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 47.0 3.74e-01 82.4% 95.8%
1t6cA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 46.0 3.79e-01 97.1% 44.8%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 50.0 4.44e-01 97.1% 88.2%
2h34A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 49.0 3.80e-01 100.0% 77.5%
7qoaA01 1.10.4160.10 Mainly Alpha › Orthogonal Bundle › Hydantoin permease › Hydantoin permease 0.52 43.0 2.78e-01 97.1% 87.4%
5cxxB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 3.00e-01 100.0% 28.8%
2rhmC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 3.21e-01 97.1% 50.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3326044 192.15.1.1 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › VPS28 0.78 56.0 4.72e-01 80.9% 46.4%
4935614 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.78 54.0 3.79e-01 77.9% 24.5%
3881880 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.77 64.0 5.16e-01 100.0% 48.8%
5027625 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.70 52.0 3.77e-01 77.9% 66.3%
3325892 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.69 54.0 5.16e-01 97.1% 72.5%
3176007 109.4.1.235 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 0.68 60.0 4.13e-01 100.0% 37.9%
5046472 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.66 58.0 5.22e-01 100.0% 76.8%
3170253 632.3.1.11 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › SUV3_C 0.65 50.0 4.91e-01 91.2% 76.0%
4981929 3457.1.1.3 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II 0.65 48.0 3.37e-01 79.4% 23.5%
3744528 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.64 54.0 5.07e-01 97.1% 75.3%
3736828 109.4.1.911 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C 0.63 53.0 3.20e-01 97.1% 29.4%
5018187 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.63 48.0 4.89e-01 91.2% 87.7%
3593998 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.62 53.0 4.34e-01 97.1% 50.8%
3715327 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.62 50.0 4.42e-01 97.1% 60.0%
5067494 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.54 39.0 2.97e-01 77.9% 49.1%
4028663 545.1.2.0 ↗ alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain 0.52 44.0 3.78e-01 97.1% 80.9%