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NC_028983.1__YP_009216032.1__AVV46_gp034__00034

Bact-Vir

NC_028983.1__YP_009216032.1__AVV46_gp034__00034

Identity

Accession:
NC_028983 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Siminovitchvirus› Bacillus_phage_Shanette

TaxID: 1296656

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-111
PDB
Domain cluster: rep: KF554508.2__AID50622.1__X__00187__D19-110
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.68 31.0 4.08e-01 79.1% 80.4%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.66 30.0 3.90e-01 99.1% 76.3%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.66 41.0 3.70e-01 98.2% 46.9%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 38.0 3.28e-01 98.2% 40.2%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.60 36.0 3.53e-01 76.4% 54.0%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.59 27.0 3.44e-01 78.2% 71.4%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 51.0 4.79e-01 95.5% 91.2%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.59 41.0 3.60e-01 98.2% 50.3%
3f65G01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 4.10e-01 78.2% 74.3%
6xaxA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 33.0 3.70e-01 75.5% 74.1%
2carB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.56 44.0 3.71e-01 100.0% 48.5%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 27.0 3.51e-01 91.8% 85.0%
5cyxA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 35.0 3.55e-01 79.1% 65.1%
6mfaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 32.0 3.64e-01 75.5% 79.7%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 35.0 3.74e-01 95.5% 77.2%
3tesA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 32.0 3.40e-01 75.5% 67.0%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 31.0 3.36e-01 86.4% 68.5%
1egjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 34.0 3.57e-01 79.1% 71.3%
3s9dD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.64e-01 97.3% 75.0%
5fmvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 28.0 3.16e-01 82.7% 66.7%
1b9lA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.52 37.0 3.67e-01 74.5% 77.3%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.62e-01 98.2% 75.5%
4cvuA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.55e-01 96.4% 66.4%
4bnqB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.52 43.0 3.66e-01 100.0% 53.6%
1dhnA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.51 37.0 3.66e-01 76.4% 80.2%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.52e-01 97.3% 74.2%
1xo8A00 2.60.40.1820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.71e-01 89.1% 62.9%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.53e-01 79.1% 70.6%
2x10A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 32.0 3.39e-01 77.3% 70.3%
6k96B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 35.0 3.70e-01 76.4% 80.4%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034879 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 36.0 4.20e-01 89.1% 70.0%
5079559 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 61.0 6.03e-01 97.3% 98.3%
3534691 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.68 42.0 3.59e-01 98.2% 40.6%
3484227 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.66 41.0 3.48e-01 97.3% 40.0%
4367390 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.65 35.0 2.31e-01 100.0% 12.7%
4025435 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.65 42.0 3.44e-01 98.2% 37.4%
3976188 1.1.13.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.62 54.0 4.80e-01 99.1% 79.4%
2595159 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.62 56.0 4.83e-01 98.2% 80.7%
5011691 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 39.0 3.88e-01 78.2% 61.7%
4942841 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 35.0 3.53e-01 93.6% 53.9%
3962632 7504.1.1.3 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf 0.60 40.0 3.68e-01 79.1% 52.9%
4888726 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.60 54.0 4.72e-01 100.0% 83.5%
5050943 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 39.0 4.11e-01 77.3% 74.0%
5030840 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 4.24e-01 98.2% 68.8%
3824886 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 4.09e-01 79.1% 71.9%
None — 0.57 45.0 3.80e-01 100.0% 48.2%
5044830 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 39.0 3.94e-01 77.3% 71.8%
3461759 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 3.70e-01 76.4% 64.7%
3429541 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.55 41.0 3.91e-01 78.2% 69.2%
3826797 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.55 48.0 4.32e-01 99.1% 68.6%
5043857 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 3.73e-01 77.3% 64.3%
3854263 11.1.1.462 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › REJ 0.54 38.0 3.74e-01 77.3% 66.7%
3320333 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.92e-01 99.1% 58.8%
3360481 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.54 44.0 4.14e-01 99.1% 71.4%
3635453 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.86e-01 80.0% 70.8%
3199282 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.53 45.0 3.02e-01 90.9% 65.1%
3334409 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.92e-01 99.1% 61.3%
3174323 7504.1.1.3 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf 0.53 47.0 3.78e-01 100.0% 56.4%
4013759 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.73e-01 77.3% 74.6%
3813125 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.98e-01 99.1% 65.2%
4464020 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.53 45.0 3.69e-01 100.0% 49.5%
3367332 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.53 39.0 3.55e-01 79.1% 64.5%
3484359 7504.1.1.3 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf 0.52 47.0 3.82e-01 100.0% 53.3%
3553322 5089.1.1.3 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Gasdermin 0.52 40.0 3.06e-01 80.9% 44.9%
3223243 6165.1.1.1 ↗ beta sandwiches › Piezo CTL2 domain › Piezo CTL2 domain › Piezo CTL2 domain › Piezo_RRas_bdg 0.52 45.0 3.44e-01 96.4% 85.8%
3417545 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.52 39.0 3.62e-01 78.2% 68.1%
5007158 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 35.0 3.58e-01 78.2% 71.4%
3715934 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.40e-01 80.9% 75.6%
3366447 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.85e-01 99.1% 65.6%
3485933 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 42.0 3.93e-01 95.5% 73.3%