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NC_028983.1__YP_009216067.1__AVV46_gp069__00069
Bact-VirNC_028983.1__YP_009216067.1__AVV46_gp069__00069
Identity
- Accession:
- NC_028983 ↗
- Kingdom:
- phage
Quality
85.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Siminovitchvirus›
Bacillus_phage_Shanette
TaxID: 1296656
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-87
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 36.0 | 4.92e-01 | 76.5% | 95.6% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 43.0 | 2.95e-01 | 70.6% | 92.2% |
| 2rqxA00 | 2.40.50.650 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 41.0 | 4.26e-01 | 84.7% | 75.3% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.55 | 45.0 | 3.72e-01 | 88.2% | 73.2% |
| 2p1gA02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.54 | 38.0 | 3.61e-01 | 72.9% | 65.0% |
| 4gnxB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 39.0 | 3.39e-01 | 83.5% | 51.6% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.52 | 34.0 | 3.21e-01 | 83.5% | 54.3% |
| 3rlfF03 | 2.40.430.10 | Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP | 0.51 | 41.0 | 4.11e-01 | 88.2% | 94.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4621153 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 34.0 | 3.98e-01 | 80.0% | 60.0% |
| 4467360 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 34.0 | 3.95e-01 | 80.0% | 60.0% |
| 4289792 | 2.14.1.1 ↗ | beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC | 0.68 | 41.0 | 4.55e-01 | 80.0% | 74.3% |
| 3826272 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.66 | 46.0 | 3.05e-01 | 71.8% | 86.0% |
| 1088864 | 9.1.1.15 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF2147 | 0.61 | 43.0 | 3.63e-01 | 74.1% | 93.9% |
| 5054047 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 33.0 | 3.53e-01 | 81.2% | 62.7% |
| 5075592 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.57 | 42.0 | 3.37e-01 | 77.6% | 61.8% |
| 4161413 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.57 | 47.0 | 3.26e-01 | 94.1% | 87.5% |
| 1034013 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.55 | 44.0 | 4.58e-01 | 87.1% | 97.4% |
| 3514491 | 5.1.4.242 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N | 0.54 | 43.0 | 2.83e-01 | 87.1% | 65.4% |
| 3596085 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.53 | 40.0 | 4.15e-01 | 80.0% | 90.0% |
| 153248 | 219.1.1.40 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AmiA-like | 0.53 | 37.0 | 2.77e-01 | 74.1% | 28.0% |
| 3386839 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.53 | 39.0 | 3.23e-01 | 78.8% | 71.7% |
| 3931122 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 43.0 | 4.22e-01 | 98.8% | 82.1% |
| 3223871 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.52 | 45.0 | 3.54e-01 | 98.8% | 78.4% |
| 5037694 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.51 | 41.0 | 3.85e-01 | 83.5% | 75.0% |
| 4928221 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 37.0 | 3.29e-01 | 80.0% | 52.4% |
| 4237612 | 3006.1.1.6 ↗ | a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › CPSF73-100_C | 0.50 | 36.0 | 3.68e-01 | 83.5% | 76.5% |
| 3244220 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.50 | 39.0 | 2.97e-01 | 84.7% | 70.5% |