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NC_028983.1__YP_009216104.1__AVV46_gp188__00106

Bact-Vir

NC_028983.1__YP_009216104.1__AVV46_gp188__00106

Identity

Accession:
NC_028983 ↗
Kingdom:
phage

Quality

74.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 28-64_86-121
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6eb0A01 1.10.3140.10 Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 0.52 41.0 3.31e-01 89.0% 96.1%
D2 medium residues 65-85_122-201
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.84 62.0 6.68e-01 77.2% 93.2%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.82 45.0 5.64e-01 72.3% 87.5%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.81 60.0 6.18e-01 76.2% 94.7%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.79 50.0 5.52e-01 96.0% 78.3%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.79 55.0 6.33e-01 72.3% 100.0%
2pfdA03 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.79 66.0 5.21e-01 90.1% 92.6%
3lmfA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.78 58.0 5.68e-01 77.2% 76.1%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.78 56.0 5.69e-01 74.3% 78.0%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.77 63.0 5.01e-01 88.1% 87.5%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.77 57.0 5.06e-01 79.2% 64.6%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 56.0 5.59e-01 78.2% 93.4%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.75 57.0 5.41e-01 79.2% 85.5%
2vgxB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.75 48.0 4.20e-01 96.0% 44.8%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.75 54.0 5.17e-01 75.2% 81.0%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.74 38.0 5.13e-01 87.1% 100.0%
3n71A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 52.0 4.03e-01 95.0% 35.2%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.72 51.0 5.68e-01 76.2% 94.9%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.72 54.0 4.58e-01 79.2% 87.4%
2clbA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.72 52.0 4.51e-01 76.2% 89.9%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 57.0 6.15e-01 100.0% 100.0%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.71 54.0 5.77e-01 100.0% 95.3%
4nq0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 54.0 4.03e-01 81.2% 70.1%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.71 56.0 6.02e-01 96.0% 98.8%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.70 55.0 4.26e-01 84.2% 47.0%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.70 52.0 5.53e-01 78.2% 93.1%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 50.0 5.08e-01 75.2% 88.1%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 57.0 5.93e-01 98.0% 95.7%
1jnrA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.69 52.0 4.89e-01 79.2% 83.5%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 56.0 5.19e-01 100.0% 69.8%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 48.0 5.04e-01 100.0% 82.2%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 54.0 5.66e-01 100.0% 94.5%
3ceqA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 47.0 3.54e-01 97.0% 29.2%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.67 50.0 4.49e-01 79.2% 78.7%
1siqA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.66 45.0 3.89e-01 70.3% 65.8%
2pg0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 45.0 3.94e-01 71.3% 69.1%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.63 45.0 4.37e-01 76.2% 93.2%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.62 55.0 5.02e-01 99.0% 74.6%
1om2A00 1.20.960.10 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Mitochondrial outer membrane translocase complex, subunit Tom20 domain 0.62 41.0 4.29e-01 83.2% 72.6%
3craA02 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.60 43.0 4.00e-01 78.2% 58.6%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 46.0 4.50e-01 99.0% 75.0%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 42.0 3.76e-01 76.2% 84.6%
3lxzB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 46.0 4.19e-01 97.0% 63.8%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 52.0 4.21e-01 98.0% 76.3%
6wh0A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.57 49.0 4.34e-01 95.0% 83.6%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 39.0 2.84e-01 70.3% 29.4%
3bbyA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 42.0 4.07e-01 94.1% 73.5%
3cbuA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 45.0 4.14e-01 95.0% 71.6%
4rg9B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 42.0 3.55e-01 87.1% 73.7%
4rm7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 45.0 4.12e-01 100.0% 78.4%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.51 46.0 3.36e-01 100.0% 38.9%
2jifA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 44.0 3.92e-01 100.0% 72.1%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 44.0 4.01e-01 100.0% 78.7%
5zctA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 35.0 3.44e-01 95.0% 64.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033482 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.86 61.0 6.52e-01 73.3% 97.8%
3341807 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.85 65.0 6.29e-01 79.2% 79.1%
3598538 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.84 53.0 6.50e-01 76.2% 100.0%
3497418 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.84 64.0 6.43e-01 79.2% 93.0%
3828970 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.83 63.0 6.56e-01 79.2% 91.6%
3678146 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.81 62.0 5.49e-01 79.2% 62.1%
3198009 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.81 63.0 6.81e-01 99.0% 96.5%
3725161 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.80 60.0 5.78e-01 79.2% 76.5%
3270031 5000.4.1.1 alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N 0.79 57.0 4.05e-01 74.3% 33.8%
3405975 633.21.1.42 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF4781 0.76 56.0 4.50e-01 76.2% 73.0%
5000552 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.76 57.0 5.72e-01 95.0% 79.0%
3436028 109.4.1.218 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP 0.75 54.0 4.20e-01 96.0% 35.7%
3358888 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.75 56.0 5.42e-01 79.2% 70.9%
4973584 604.3.1.51 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › 8xMP 0.74 56.0 5.91e-01 78.2% 100.0%
4358621 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.74 49.0 5.45e-01 75.2% 86.1%
5004483 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.73 53.0 5.72e-01 76.2% 90.6%
3604984 109.4.1.621 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 0.73 48.0 4.02e-01 78.2% 41.2%
3236284 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.72 53.0 5.90e-01 89.1% 97.5%
3581224 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 47.0 3.32e-01 97.0% 23.1%
5046472 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.71 60.0 6.24e-01 97.0% 96.8%
3212257 601.33.1.10 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › DUF19 0.70 53.0 5.32e-01 98.0% 77.1%
4227989 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.70 49.0 5.21e-01 79.2% 82.0%
3223084 601.33.1.10 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › DUF19 0.70 53.0 4.43e-01 100.0% 47.6%
3382338 109.4.1.1271 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.70 45.0 3.60e-01 83.2% 33.8%
3788386 109.4.1.486 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPM2 0.69 53.0 4.07e-01 81.2% 40.0%
3593242 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 55.0 3.24e-01 87.1% 19.6%
3242360 604.3.1.13 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF19 0.69 51.0 5.62e-01 78.2% 100.0%
3614643 109.4.1.1334 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long 0.68 55.0 3.25e-01 87.1% 21.2%
3226217 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.68 50.0 4.50e-01 79.2% 63.4%
3328086 3922.1.1.71 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Exo70_N 0.68 61.0 5.64e-01 97.0% 92.8%
3609830 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 62.0 4.54e-01 100.0% 48.8%
3808736 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 60.0 4.50e-01 100.0% 60.8%
4479462 109.4.1.179 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nro1 0.66 51.0 4.12e-01 83.2% 42.0%
3615307 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 47.0 4.85e-01 75.2% 78.9%
3848246 109.12.1.4 alpha superhelices › Repetitive alpha hairpins › C-terminal domain of Ku80 › C-terminal domain of Ku80 › ZSWIM4-8_C 0.66 50.0 4.79e-01 79.2% 73.9%
3368348 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.66 59.0 5.34e-01 99.0% 73.3%
3609309 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 55.0 4.27e-01 93.1% 45.3%
3444267 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 49.0 4.19e-01 81.2% 49.1%
3784566 604.1.1.191 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29057 0.65 56.0 5.69e-01 93.1% 93.0%
4398486 109.4.1.451 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.64 55.0 3.68e-01 97.0% 24.4%
3972200 6155.2.1.1 alpha duplicates or obligate multimers › TOG superfamily › PnuC › PnuC › NMN_transporter 0.64 49.0 4.04e-01 82.2% 49.7%
3464862 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 58.0 4.44e-01 100.0% 51.3%
5051287 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.63 48.0 3.72e-01 97.0% 38.1%
3675602 109.4.1.1686 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, HEAT_EZ 0.63 46.0 2.94e-01 83.2% 15.2%
3491048 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 57.0 4.73e-01 100.0% 61.1%
3997708 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 57.0 5.14e-01 100.0% 97.8%
185688 109.25.1.1 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.61 55.0 5.27e-01 99.0% 100.0%
4027259 109.4.1.2081 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26172, PF26188 0.60 54.0 3.43e-01 100.0% 25.0%
3180405 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.60 53.0 3.44e-01 100.0% 26.0%
3734558 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 52.0 2.98e-01 99.0% 19.3%
3398541 109.4.1.1492 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_SCC3-SA, PF31007 0.59 52.0 3.40e-01 98.0% 31.4%
3218070 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 51.0 3.75e-01 100.0% 43.5%
3817209 109.4.1.2 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.54 43.0 2.85e-01 90.1% 84.7%
3691337 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.52 39.0 3.04e-01 79.2% 83.7%
3709302 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.52 46.0 4.24e-01 94.1% 83.2%