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NC_028983.1__YP_009216115.1__AVV46_gp177__00117

Bact-Vir

NC_028983.1__YP_009216115.1__AVV46_gp177__00117

Identity

Accession:
NC_028983 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Siminovitchvirus› Bacillus_phage_Shanette

TaxID: 1296656

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 38-118
PDB
Domain cluster: rep: KR816341.1__AKQ06885.1__X__00026__D39-114
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09682.16 best Phage_holin_6_1 46.7 4.90e-12 85.2% 68.6%
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 54.0 6.25e-01 77.8% 100.0%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.77 54.0 6.18e-01 77.8% 100.0%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.75 37.0 3.89e-01 84.0% 52.0%
2dofA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.72 56.0 5.60e-01 100.0% 81.2%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.71 46.0 4.38e-01 87.7% 56.4%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.69 57.0 5.49e-01 90.1% 93.6%
1ynjJ01 1.10.1790.20 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.69 52.0 4.64e-01 80.2% 97.4%
2f48A03 1.10.10.480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3 0.68 52.0 5.42e-01 87.7% 89.3%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.68 57.0 5.47e-01 92.6% 82.6%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.68 58.0 4.53e-01 97.5% 44.1%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 47.0 5.28e-01 77.8% 100.0%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 45.0 4.85e-01 88.9% 82.6%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.65 38.0 3.78e-01 72.8% 55.2%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 50.0 5.00e-01 84.0% 80.0%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.65 49.0 4.49e-01 85.2% 61.9%
4ixjA01 3.30.1300.80 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.64 49.0 5.05e-01 81.5% 89.6%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 50.0 4.16e-01 87.7% 47.6%
2pybA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 44.0 3.56e-01 70.4% 88.1%
2c5uA02 1.10.3550.20 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › 0.64 47.0 4.05e-01 90.1% 48.9%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 43.0 4.43e-01 71.6% 81.0%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.62 53.0 4.27e-01 90.1% 71.5%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 42.0 4.33e-01 70.4% 73.4%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.62 48.0 4.06e-01 88.9% 49.0%
1lwbA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.61 44.0 3.91e-01 76.5% 58.2%
2np5D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 48.0 3.86e-01 84.0% 55.7%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 48.0 4.07e-01 87.7% 50.7%
1nlxA00 1.20.120.320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen 0.60 49.0 4.55e-01 90.1% 100.0%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.60 48.0 3.71e-01 85.2% 79.5%
2k3qA00 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.60 49.0 4.37e-01 91.4% 74.6%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 47.0 4.02e-01 85.2% 53.8%
2ykgA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.60 42.0 3.59e-01 75.3% 45.1%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 42.0 4.33e-01 75.3% 89.7%
7shlA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.59 45.0 4.01e-01 84.0% 57.4%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.58 47.0 4.44e-01 91.4% 74.5%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.57 42.0 3.91e-01 76.5% 82.0%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 3.54e-01 92.6% 48.1%
4nx8B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 49.0 3.48e-01 97.5% 68.7%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.57 38.0 3.65e-01 70.4% 58.3%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 40.0 4.05e-01 74.1% 76.5%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.56 48.0 4.58e-01 98.8% 95.9%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.56 43.0 4.23e-01 81.5% 77.6%
1c02A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.56 42.0 3.32e-01 80.2% 76.5%
1orsC00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.55 40.0 3.35e-01 90.1% 47.0%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 46.0 3.90e-01 97.5% 98.6%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 45.0 3.81e-01 92.6% 73.7%
16vpA00 1.10.1290.10 Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) 0.54 45.0 3.15e-01 100.0% 61.1%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 39.0 3.59e-01 88.9% 57.1%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 41.0 3.50e-01 86.4% 95.8%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 41.0 3.33e-01 87.7% 63.1%
7xk2R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 41.0 2.87e-01 84.0% 38.5%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 41.0 3.45e-01 86.4% 97.3%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 45.0 3.79e-01 97.5% 58.2%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.51 38.0 4.02e-01 84.0% 89.0%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 3.62e-01 96.3% 88.7%
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.51 37.0 3.22e-01 77.8% 47.7%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 3.60e-01 97.5% 98.0%
1v07A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 42.0 3.84e-01 92.6% 70.9%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082325 3705.1.1.3 ↗ alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.96 80.0 8.61e-01 86.4% 100.0%
3643885 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 65.0 6.98e-01 88.9% 100.0%
4350523 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.78 69.0 6.40e-01 95.1% 84.0%
4220501 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.76 62.0 5.89e-01 87.7% 83.2%
4479551 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.76 66.0 6.42e-01 95.1% 93.3%
3590474 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 53.0 5.22e-01 88.9% 69.4%
4589278 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.75 58.0 5.32e-01 85.2% 63.8%
4279089 7094.1.1.3 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C 0.75 65.0 5.70e-01 100.0% 64.2%
4998788 3236.1.1.1 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.74 61.0 3.86e-01 88.9% 18.8%
3657981 198.1.1.16 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 0.74 61.0 6.21e-01 90.1% 90.0%
3839206 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.73 64.0 6.44e-01 95.1% 100.0%
4567935 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 55.0 5.96e-01 87.7% 100.0%
4965872 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.72 48.0 4.49e-01 86.4% 55.0%
4071682 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.72 61.0 4.65e-01 92.6% 70.3%
4617287 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.72 61.0 5.96e-01 95.1% 93.3%
4560206 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.71 59.0 5.71e-01 90.1% 92.2%
4618102 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.71 63.0 6.33e-01 98.8% 100.0%
5000678 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.71 45.0 4.25e-01 84.0% 53.0%
4310372 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.71 59.0 4.56e-01 92.6% 70.8%
4933807 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 5.27e-01 85.2% 76.5%
3668680 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.70 56.0 5.25e-01 86.4% 71.0%
3839204 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.70 60.0 4.59e-01 92.6% 46.1%
3575378 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 61.0 5.86e-01 98.8% 86.3%
5072566 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.70 49.0 5.21e-01 72.8% 91.4%
3958919 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 5.64e-01 92.6% 78.9%
3409412 101.1.10.19 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6_2nd 0.70 49.0 4.66e-01 93.8% 62.1%
4595954 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.70 61.0 6.04e-01 98.8% 97.6%
3742639 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.70 55.0 4.52e-01 86.4% 55.3%
4244937 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.69 59.0 3.97e-01 93.8% 80.7%
4436943 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.69 60.0 6.03e-01 96.3% 97.5%
3876674 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 56.0 5.42e-01 91.4% 78.9%
4226337 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.69 59.0 5.96e-01 97.5% 97.5%
3962321 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 5.06e-01 86.4% 88.0%
1088836 101.38.1.0 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep 0.68 57.0 4.97e-01 92.6% 62.3%
5045956 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 53.0 5.37e-01 84.0% 85.0%
4371007 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.68 58.0 5.78e-01 97.5% 97.6%
3737247 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.67 49.0 3.61e-01 87.7% 28.6%
3389549 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.67 57.0 5.62e-01 98.8% 95.6%
3535212 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.67 54.0 5.28e-01 95.1% 80.0%
4624818 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.67 52.0 5.02e-01 82.7% 88.9%
5025586 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.67 48.0 4.99e-01 74.1% 89.3%
5048577 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.66 56.0 5.66e-01 95.1% 100.0%
3890334 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.65 51.0 4.87e-01 92.6% 73.7%
3180584 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.65 55.0 5.39e-01 97.5% 96.7%
3992117 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.64 57.0 4.33e-01 100.0% 79.4%
3925125 4207.1.1.60 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF31020 0.64 56.0 5.09e-01 98.8% 73.6%
5036344 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.64 55.0 3.98e-01 96.3% 49.4%
3357833 101.1.2.509 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25879 0.63 54.0 5.44e-01 95.1% 96.2%
3492714 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.63 43.0 3.35e-01 70.4% 35.0%
3270121 621.1.1.2 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.63 48.0 4.71e-01 84.0% 76.7%
1145724 601.21.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Baculo_p33 0.63 46.0 4.27e-01 77.8% 63.1%
3406729 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.62 52.0 4.82e-01 90.1% 76.0%
4411256 2004.1.1.80 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.62 53.0 3.76e-01 92.6% 63.7%
3390806 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.61 50.0 4.77e-01 91.4% 77.9%
4177832 621.1.1.2 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.61 46.0 4.44e-01 85.2% 70.5%
5011074 1111.1.1.8 ↗ alpha complex topology › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › DUF2070 0.61 49.0 3.90e-01 88.9% 52.4%
4379647 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.60 52.0 4.19e-01 100.0% 79.4%
3607719 633.24.1.0 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.60 46.0 4.54e-01 82.7% 90.6%
3314545 4030.1.1.0 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.59 40.0 4.31e-01 80.2% 87.7%
4480106 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.58 51.0 3.88e-01 98.8% 74.5%
3402232 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.58 50.0 4.69e-01 97.5% 83.0%
3404256 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.57 48.0 4.51e-01 95.1% 81.0%
3958903 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.56 45.0 4.21e-01 90.1% 71.4%
3205696 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.56 48.0 4.13e-01 98.8% 94.1%
5057804 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.53 37.0 3.82e-01 71.6% 82.7%
3624258 109.4.1.1808 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3, PF30235 0.51 44.0 2.49e-01 96.3% 12.2%