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NC_028983.1__YP_009216179.1__AVV46_gp113__00181

Bact-Vir

NC_028983.1__YP_009216179.1__AVV46_gp113__00181

Identity

Accession:
NC_028983 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Siminovitchvirus› Bacillus_phage_Shanette

TaxID: 1296656

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 48.0 4.54e-01 86.8% 56.6%
2dmgA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.69 50.0 3.90e-01 76.5% 85.9%
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 40.0 4.67e-01 91.2% 87.0%
2z0uA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.67 50.0 4.07e-01 79.4% 96.9%
1jdiA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.67 50.0 3.48e-01 80.9% 52.9%
5h4zA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.63 47.0 3.88e-01 80.9% 96.9%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.44e-01 100.0% 38.3%
4da2A01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 4.31e-01 94.1% 69.6%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.15e-01 100.0% 16.9%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 42.0 2.77e-01 75.0% 99.4%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 46.0 2.73e-01 82.4% 94.4%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.59 45.0 3.39e-01 82.4% 47.5%
1imvA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 52.0 3.88e-01 100.0% 59.8%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.58 40.0 2.55e-01 73.5% 30.1%
1wz9A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 52.0 4.06e-01 100.0% 66.9%
4xiwC00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.57 44.0 3.13e-01 86.8% 64.4%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.57 40.0 3.40e-01 75.0% 47.5%
3f1sA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 50.0 3.89e-01 100.0% 66.7%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 38.0 2.51e-01 97.1% 17.0%
1jmoA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 49.0 3.86e-01 100.0% 68.0%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.76e-01 98.5% 54.9%
4ah6A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 48.0 4.14e-01 98.5% 78.1%
1sqwA01 3.10.450.220 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 49.0 4.42e-01 95.6% 77.4%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.76e-01 100.0% 18.4%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.80e-01 86.8% 92.8%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.53 41.0 4.20e-01 100.0% 86.6%
1gxrA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.69e-01 86.8% 83.0%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.52 39.0 3.60e-01 100.0% 62.8%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.52 36.0 2.33e-01 73.5% 64.3%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.52 39.0 2.64e-01 82.4% 99.6%
5xnrA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 2.58e-01 76.5% 50.0%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 35.0 2.30e-01 100.0% 14.9%
2frxA02 3.10.450.720 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.30e-01 100.0% 39.0%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 37.0 3.29e-01 76.5% 55.6%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 45.0 2.82e-01 100.0% 18.3%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 41.0 2.88e-01 98.5% 51.0%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.51 47.0 4.46e-01 100.0% 87.3%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 41.0 2.63e-01 89.7% 24.3%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.51 37.0 3.27e-01 77.9% 60.4%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 39.0 3.64e-01 85.3% 93.3%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.63e-01 91.2% 24.1%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.50 33.0 2.36e-01 85.3% 20.3%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4021971 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.74 43.0 2.99e-01 100.0% 19.0%
4029037 5.1.5.145 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › eIF2A 0.72 43.0 2.51e-01 100.0% 7.9%
3174821 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.70 50.0 3.19e-01 100.0% 15.7%
4184400 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.68 48.0 3.85e-01 73.5% 58.5%
3904275 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.61 47.0 2.82e-01 82.4% 93.3%
4250117 2.1.1.83 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.61 45.0 4.34e-01 94.1% 68.8%
3668896 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 53.0 3.17e-01 100.0% 14.7%
3545617 5.1.11.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_RIC1_2nd 0.59 43.0 2.46e-01 76.5% 56.3%
5021624 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.58 45.0 2.86e-01 88.2% 89.8%
3910381 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.56e-01 82.4% 76.5%
4929601 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.81e-01 82.4% 89.9%
3592621 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.77e-01 82.4% 84.8%
3176048 5.1.4.351 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_SPT8 0.57 43.0 2.66e-01 80.9% 91.7%
3708100 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 2.73e-01 100.0% 12.2%
3938828 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.86e-01 92.6% 24.0%
4018397 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 42.0 2.66e-01 82.4% 86.1%
3895977 5.1.4.56 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 0.56 49.0 2.98e-01 100.0% 16.3%
4014129 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 2.95e-01 100.0% 15.3%
3307995 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 46.0 2.81e-01 100.0% 16.3%
5039963 12.3.1.12 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_transf_36 0.55 49.0 3.34e-01 100.0% 38.0%
3579989 5.1.4.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.55 44.0 2.70e-01 100.0% 16.1%
3618164 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.55 44.0 2.50e-01 100.0% 9.1%
3202610 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 44.0 2.77e-01 100.0% 18.6%
3847020 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.54 46.0 2.84e-01 100.0% 17.5%
3695948 5.1.4.56 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 0.54 49.0 2.91e-01 100.0% 14.5%
3418966 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.54 44.0 2.69e-01 92.6% 20.8%
4030001 5.1.4.621 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Mcl1_mid 0.54 44.0 2.49e-01 100.0% 8.6%
3317244 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 47.0 2.96e-01 100.0% 18.1%
3781121 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 40.0 2.60e-01 82.4% 95.4%
None — 0.53 44.0 2.44e-01 100.0% 6.7%
3178539 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 48.0 2.95e-01 100.0% 19.5%
3677146 5.1.4.275 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_NOL10_N 0.53 44.0 2.74e-01 100.0% 17.2%
3992587 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 2.57e-01 100.0% 10.5%
3597435 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 40.0 2.54e-01 82.4% 88.8%
4220637 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 43.0 2.75e-01 91.2% 22.0%
3407234 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 42.0 2.82e-01 100.0% 23.6%
3515415 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.29e-01 85.3% 8.8%
3517557 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.52 44.0 2.76e-01 100.0% 18.0%
3608706 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 49.0 3.02e-01 100.0% 22.9%
3538579 5.1.5.135 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Sema 0.52 46.0 2.76e-01 100.0% 32.1%
4390303 5.1.3.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.52 47.0 2.72e-01 100.0% 13.1%
4012750 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 46.0 2.75e-01 100.0% 15.7%
4030473 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.64e-01 91.2% 27.4%
3475221 5.1.5.173 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_VPS8, Beta-prop_WDR3_2nd 0.52 43.0 2.69e-01 100.0% 17.7%
3911662 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.52 36.0 2.58e-01 73.5% 68.3%
3183049 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 45.0 2.74e-01 100.0% 16.3%
3316989 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 40.0 2.55e-01 86.8% 82.8%
4026277 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 42.0 3.01e-01 97.1% 62.1%
3819476 5.1.4.430 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30506 0.51 44.0 2.61e-01 100.0% 13.0%
3930592 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 43.0 2.75e-01 100.0% 20.0%
3659251 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 44.0 2.84e-01 100.0% 22.9%
3996732 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.81e-01 94.1% 30.2%
3924277 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.51 39.0 2.24e-01 86.8% 46.6%
4953898 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 43.0 3.63e-01 100.0% 68.8%
3224107 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.68e-01 100.0% 31.8%
3207028 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.50 47.0 2.83e-01 100.0% 19.0%
3916215 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 2.80e-01 100.0% 98.9%
3659657 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 45.0 2.57e-01 100.0% 9.9%
3342167 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 43.0 3.23e-01 100.0% 38.8%
4023479 5.1.4.342 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EDC4L 0.50 44.0 2.63e-01 100.0% 14.5%
1547989 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 35.0 2.32e-01 75.0% 33.6%
3781917 5.1.4.332 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.50 43.0 2.70e-01 100.0% 20.0%
3175498 5.1.4.332 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.50 42.0 2.64e-01 100.0% 17.5%
3614378 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 45.0 2.94e-01 98.5% 25.8%