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NC_028983.1__YP_009216180.1__AVV46_gp112__00182

Bact-Vir

NC_028983.1__YP_009216180.1__AVV46_gp112__00182

Identity

Accession:
NC_028983 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-72
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7bi4A01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.66 44.0 3.19e-01 70.0% 25.8%
4oe6B02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.66 42.0 3.06e-01 74.3% 24.1%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 35.0 3.59e-01 82.9% 52.2%
2mmbA00 4.10.640.20 Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › 0.62 43.0 3.75e-01 72.9% 49.5%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.61 33.0 3.92e-01 74.3% 78.7%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 44.0 3.06e-01 100.0% 73.2%
1mv5D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 35.0 2.42e-01 72.9% 69.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3439198 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.72 47.0 4.89e-01 71.4% 70.8%
3740581 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 47.0 3.75e-01 72.9% 37.0%
3718100 109.4.1.109 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.60 52.0 3.65e-01 100.0% 30.6%
3657213 192.6.1.1 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.58 45.0 4.79e-01 90.0% 98.3%
3646516 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.57 43.0 4.26e-01 82.9% 90.7%
3658301 3860.1.1.249 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › NFD4_C 0.51 38.0 2.68e-01 80.0% 52.3%