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NC_028995.1__YP_009216816.1__AVV48_gp48__00048

Bact-Vir

NC_028995.1__YP_009216816.1__AVV48_gp48__00048

Identity

Accession:
NC_028995 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acinetobacter_phage_phiAC-1

TaxID: 1229760

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-76
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.77 68.0 6.46e-01 100.0% 90.3%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.71 61.0 5.93e-01 100.0% 91.3%
2qrdA00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.69 60.0 4.91e-01 100.0% 89.5%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.69 58.0 4.90e-01 100.0% 90.0%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.68 56.0 4.42e-01 93.3% 85.4%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.67 58.0 5.08e-01 100.0% 74.5%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.66 55.0 4.90e-01 96.7% 65.2%
2ostD00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.66 56.0 4.42e-01 98.3% 84.2%
2yrrA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 55.0 4.44e-01 93.3% 77.5%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 42.0 3.54e-01 70.0% 48.6%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 53.0 4.97e-01 98.3% 96.1%
1xmbA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 52.0 3.35e-01 91.7% 81.8%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.62 46.0 3.62e-01 80.0% 57.8%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.62 44.0 4.20e-01 76.7% 88.7%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 39.0 3.31e-01 70.0% 35.2%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.61 51.0 4.53e-01 96.7% 85.7%
4c3xA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.16e-01 100.0% 74.0%
4in3B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 43.0 2.48e-01 76.7% 13.2%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 40.0 3.58e-01 73.3% 71.4%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.58 43.0 3.37e-01 85.0% 60.4%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 3.29e-01 71.7% 89.2%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.57 43.0 3.24e-01 83.3% 49.7%
1ekzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 44.0 4.21e-01 93.3% 90.8%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 45.0 3.94e-01 93.3% 75.8%
2bs2A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 2.98e-01 100.0% 75.1%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 36.0 3.74e-01 71.7% 72.7%
4i3vA02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.55 41.0 2.85e-01 95.0% 24.2%
2z61A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 48.0 3.58e-01 100.0% 51.6%
3eleC01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 47.0 3.49e-01 100.0% 48.2%
1uv7A00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.54 41.0 3.89e-01 100.0% 67.1%
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.21e-01 98.3% 100.0%
4w1vA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 43.0 3.25e-01 95.0% 51.3%
1o4sA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 44.0 3.37e-01 95.0% 53.6%
2o1bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 43.0 3.34e-01 96.7% 56.7%
4emyA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 42.0 3.14e-01 93.3% 42.4%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 3.77e-01 85.0% 88.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5046768 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.80 70.0 6.66e-01 96.7% 88.6%
1837476 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.78 66.0 6.45e-01 95.0% 92.5%
5043206 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.76 68.0 6.19e-01 100.0% 85.0%
3818511 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.75 66.0 5.13e-01 100.0% 74.6%
4358407 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.74 52.0 4.23e-01 73.3% 40.9%
4587271 9002.1.1.1 ↗ a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 0.73 55.0 5.89e-01 83.3% 96.0%
4679871 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.73 64.0 5.81e-01 98.3% 81.2%
4521206 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.73 63.0 6.07e-01 100.0% 90.0%
4975323 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.72 63.0 5.57e-01 100.0% 75.6%
4991248 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 64.0 4.41e-01 100.0% 82.4%
4609138 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.72 64.0 4.77e-01 100.0% 52.7%
4998266 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.72 61.0 5.89e-01 98.3% 90.0%
3647550 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.71 63.0 5.65e-01 100.0% 84.7%
5028450 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.70 61.0 5.79e-01 96.7% 87.1%
4963099 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.70 59.0 5.81e-01 96.7% 92.3%
4201840 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.70 58.0 5.28e-01 91.7% 73.8%
4027522 331.9.1.5 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf 0.69 59.0 5.15e-01 100.0% 77.6%
1199657 9002.1.1.1 ↗ a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 0.69 52.0 5.36e-01 83.3% 85.7%
5004871 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.69 59.0 5.26e-01 100.0% 85.6%
4478959 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.69 61.0 5.67e-01 100.0% 85.3%
4599964 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.69 57.0 5.36e-01 96.7% 76.0%
4949317 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 60.0 4.94e-01 100.0% 86.4%
4933321 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.68 47.0 3.57e-01 73.3% 65.3%
4080030 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.68 58.0 5.39e-01 96.7% 77.3%
4659650 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.67 59.0 5.16e-01 98.3% 71.1%
4446499 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.67 56.0 5.18e-01 96.7% 72.5%
4088649 2008.1.1.141 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.66 58.0 4.87e-01 96.7% 97.0%
5067782 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.66 55.0 5.26e-01 93.3% 88.6%
4947992 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 57.0 4.74e-01 100.0% 85.5%
4971751 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.66 58.0 4.63e-01 100.0% 67.5%
4678264 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.65 55.0 5.07e-01 98.3% 73.8%
4053762 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 56.0 4.49e-01 96.7% 80.0%
4488209 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 56.0 4.58e-01 100.0% 76.5%
5026622 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.65 57.0 4.87e-01 98.3% 82.1%
4077309 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.65 55.0 5.06e-01 98.3% 73.8%
5010590 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 56.0 4.73e-01 100.0% 91.4%
4447285 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.64 55.0 5.25e-01 96.7% 87.1%
4222489 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 54.0 4.57e-01 100.0% 80.7%
5012768 5.1.10.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF6849 0.63 40.0 3.98e-01 75.0% 60.0%
3259661 331.23.1.9 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › RnlA_toxin 0.63 52.0 4.98e-01 95.0% 95.7%
4508113 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 53.0 4.51e-01 100.0% 91.3%
2410067 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.61 50.0 5.00e-01 90.0% 93.4%
3991693 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 42.0 4.05e-01 73.3% 90.0%
3953907 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 49.0 4.11e-01 95.0% 95.7%
3973165 818.1.1.0 ↗ a+b two layers › DNA topoisomerase I domain › DNA topoisomerase I domain › DNA topoisomerase I domain 0.60 41.0 3.75e-01 71.7% 56.2%
3742222 3016.1.1.10 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.59 54.0 4.53e-01 100.0% 85.7%
5079456 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.59 42.0 3.05e-01 76.7% 39.4%
4987919 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.58 37.0 3.82e-01 70.0% 67.2%
3877107 1170.1.1.3 ↗ beta barrels › IL8-related › IL8-related › IL8 › CXCL16 0.57 35.0 3.28e-01 71.7% 48.0%
3278906 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.57 41.0 3.10e-01 80.0% 80.6%
1193916 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.57 49.0 4.13e-01 96.7% 88.1%
3266024 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 40.0 2.60e-01 81.7% 14.3%
5074419 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.56 42.0 4.17e-01 85.0% 92.3%
3597793 5094.1.1.0 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like 0.56 46.0 3.62e-01 93.3% 47.4%
5031617 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.56 40.0 3.73e-01 78.3% 98.8%
4945895 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 42.0 3.60e-01 91.7% 85.7%
5070559 206.1.3.23 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase 0.52 38.0 2.68e-01 83.3% 71.2%
5028212 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.50 42.0 3.23e-01 96.7% 85.8%
2526871 3246.1.1.4 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_3 0.50 36.0 3.23e-01 80.0% 68.8%