←Back to structures
NC_029002.1__YP_009217687.1__AVV41_gp003__00003
Bact-VirNC_029002.1__YP_009217687.1__AVV41_gp003__00003
Identity
- Accession:
- NC_029002 ↗
- Kingdom:
- phage
Quality
70.5
mean pLDDT
Taxonomy
TaxID: 1357715
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-100
Domain cluster:
rep: rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00010__D13-117
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7k98B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 72.0 | 6.79e-01 | 98.0% | 98.2% |
| 3j7yD01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 34.0 | 3.30e-01 | 93.9% | 43.4% |
| 4da2A01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.68 | 45.0 | 4.91e-01 | 85.7% | 83.5% |
| 2e8gA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 62.0 | 5.86e-01 | 100.0% | 84.5% |
| 3go5A01 | 2.40.50.330 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 43.0 | 4.86e-01 | 95.9% | 91.5% |
| 3q8dA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 46.0 | 5.11e-01 | 83.7% | 94.8% |
| 3d31A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 32.0 | 4.14e-01 | 79.6% | 100.0% |
| 1ixrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 38.0 | 4.62e-01 | 77.6% | 95.2% |
| 2zxrA01 | 2.40.50.460 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 43.0 | 3.72e-01 | 98.0% | 46.2% |
| 8aasC01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 45.0 | 4.46e-01 | 94.9% | 76.5% |
| 1jb7A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 49.0 | 4.67e-01 | 89.8% | 86.2% |
| 4mtnA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 36.0 | 4.26e-01 | 77.6% | 100.0% |
| 3f8tA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 42.0 | 4.60e-01 | 85.7% | 95.0% |
| 6l4qB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 44.0 | 3.98e-01 | 87.8% | 60.7% |
| 1bvsA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 36.0 | 4.21e-01 | 80.6% | 98.5% |
| 2qdlA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 31.0 | 3.71e-01 | 77.6% | 88.7% |
| 2h1qA01 | 3.30.390.100 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.53 | 37.0 | 3.38e-01 | 72.4% | 89.1% |
| 4npsA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 27.0 | 3.38e-01 | 78.6% | 87.9% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3262367 | 2.1.1.103 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PHA02142 | 0.92 | 89.0 | 7.45e-01 | 100.0% | 92.0% |
| 3367301 | 2.1.1.48 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C | 0.80 | 44.0 | 5.79e-01 | 84.7% | 100.0% |
| 4223430 | 2.1.1.16 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind | 0.78 | 72.0 | 6.67e-01 | 98.0% | 95.8% |
| 4981578 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 46.0 | 4.49e-01 | 85.7% | 59.0% |
| 5072770 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 41.0 | 4.80e-01 | 100.0% | 82.9% |
| 4990774 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 52.0 | 5.07e-01 | 81.6% | 99.1% |
| 4538990 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 46.0 | 5.15e-01 | 87.8% | 93.3% |
| 4926929 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 37.0 | 4.57e-01 | 79.6% | 96.4% |
| 3386763 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 40.0 | 4.72e-01 | 85.7% | 92.3% |
| 3839028 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 41.0 | 4.85e-01 | 88.8% | 96.9% |
| 4110310 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.63 | 37.0 | 4.35e-01 | 84.7% | 86.2% |
| 4129194 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.61 | 45.0 | 4.97e-01 | 86.7% | 96.2% |
| 5063097 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 35.0 | 4.00e-01 | 80.6% | 82.9% |
| 5004174 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.57 | 42.0 | 3.89e-01 | 78.6% | 98.4% |
| 3421846 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 36.0 | 4.22e-01 | 77.6% | 100.0% |
| 4630148 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.56 | 42.0 | 3.88e-01 | 79.6% | 97.6% |
| 4265586 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.55 | 41.0 | 3.77e-01 | 78.6% | 98.4% |
| 4230632 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.55 | 43.0 | 3.85e-01 | 82.7% | 98.5% |
| 4125419 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.54 | 41.0 | 3.74e-01 | 79.6% | 99.2% |
| 5021205 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.54 | 40.0 | 3.73e-01 | 79.6% | 98.5% |
| 3947186 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.53 | 40.0 | 3.81e-01 | 81.6% | 97.5% |
| 4994226 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.53 | 40.0 | 3.70e-01 | 79.6% | 97.6% |
| 3947044 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 36.0 | 4.01e-01 | 88.8% | 93.3% |
| 4987937 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.53 | 40.0 | 3.73e-01 | 81.6% | 98.4% |
| 4180663 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.52 | 38.0 | 3.59e-01 | 78.6% | 96.8% |
| 3731897 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 39.0 | 3.48e-01 | 79.6% | 61.4% |
| 3166329 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.52 | 38.0 | 3.61e-01 | 78.6% | 98.3% |
| 4434271 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.51 | 41.0 | 3.78e-01 | 86.7% | 97.6% |
| 5046464 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.50 | 38.0 | 3.66e-01 | 80.6% | 99.1% |
| 5026953 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.50 | 41.0 | 3.91e-01 | 90.8% | 99.2% |
| 4581970 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.50 | 40.0 | 3.66e-01 | 87.8% | 96.2% |
D2
high
residues 115-261