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NC_029002.1__YP_009217702.1__AVV41_gp018__00018
Bact-VirNC_029002.1__YP_009217702.1__AVV41_gp018__00018
Identity
- Accession:
- NC_029002 ↗
- Kingdom:
- phage
Quality
73.2
mean pLDDT
Taxonomy
TaxID: 1357715
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-66
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4k3bA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.67 | 52.0 | 4.72e-01 | 87.7% | 95.7% |
| 4k3bA05 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.66 | 53.0 | 5.02e-01 | 90.8% | 96.2% |
| 4k3cA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.65 | 50.0 | 4.75e-01 | 87.7% | 97.6% |
| 6j09A03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.64 | 48.0 | 4.51e-01 | 83.1% | 100.0% |
| 3q6bA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.64 | 49.0 | 4.80e-01 | 87.7% | 100.0% |
| 1vhzA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.63 | 51.0 | 3.74e-01 | 89.2% | 79.2% |
| 2qdfA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.63 | 50.0 | 4.63e-01 | 87.7% | 97.6% |
| 1g0sA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.63 | 49.0 | 3.53e-01 | 87.7% | 72.1% |
| 3rh7A02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.62 | 51.0 | 4.15e-01 | 92.3% | 63.6% |
| 4ncdA02 | 2.60.40.3970 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 53.0 | 4.82e-01 | 95.4% | 79.5% |
| 2w4eA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.61 | 49.0 | 3.92e-01 | 90.8% | 97.1% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 47.0 | 4.52e-01 | 86.2% | 100.0% |
| 4qkyA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 47.0 | 4.54e-01 | 87.7% | 100.0% |
| 2j3vA02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.59 | 43.0 | 3.11e-01 | 80.0% | 59.0% |
| 1v8wA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 46.0 | 3.59e-01 | 87.7% | 55.2% |
| 2o5fB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 47.0 | 3.63e-01 | 90.8% | 66.7% |
| 2x9zA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.59 | 48.0 | 4.08e-01 | 93.8% | 85.0% |
| 3f13B00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 46.0 | 3.62e-01 | 89.2% | 90.3% |
| 3mcfA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 45.0 | 3.68e-01 | 87.7% | 60.8% |
| 6scxA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 44.0 | 3.56e-01 | 86.2% | 100.0% |
| 5zliA01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.57 | 49.0 | 4.23e-01 | 98.5% | 87.7% |
| 3gg6A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 45.0 | 3.60e-01 | 92.3% | 95.8% |
| 2fkbC00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.56 | 44.0 | 3.42e-01 | 92.3% | 93.4% |
| 2lfiA00 | 2.60.40.4300 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 42.0 | 3.56e-01 | 87.7% | 77.9% |
| 3a6sA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 42.0 | 3.57e-01 | 89.2% | 66.4% |
| 4dywA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 42.0 | 3.50e-01 | 89.2% | 67.4% |
| 1ojqA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.53 | 38.0 | 2.72e-01 | 78.5% | 61.3% |
| 1gzeA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.52 | 38.0 | 2.74e-01 | 78.5% | 58.5% |
| 3eesA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 40.0 | 3.33e-01 | 87.7% | 97.7% |
| 1yqyA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.52 | 37.0 | 2.72e-01 | 78.5% | 54.9% |
| 5c7qB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 40.0 | 3.04e-01 | 87.7% | 48.3% |
| 4kyxA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 39.0 | 3.26e-01 | 89.2% | 98.6% |
| 3ng0A01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.52 | 42.0 | 3.74e-01 | 95.4% | 86.4% |
| 4xhzA01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 42.0 | 3.82e-01 | 100.0% | 80.0% |
| 3hhjB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 39.0 | 3.28e-01 | 89.2% | 100.0% |
| 2q2gB02 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.51 | 34.0 | 3.30e-01 | 96.9% | 58.2% |
| 5uv6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.94e-01 | 100.0% | 76.2% |
| 3h95A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 38.0 | 3.17e-01 | 87.7% | 61.8% |
| 1l3wA04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.50 | 40.0 | 3.62e-01 | 98.5% | 84.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3787852 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.66 | 55.0 | 4.60e-01 | 95.4% | 75.8% |
| 3281278 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.64 | 55.0 | 3.62e-01 | 100.0% | 99.0% |
| 4996016 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.63 | 52.0 | 3.94e-01 | 92.3% | 90.0% |
| 3965223 | 3121.1.1.5 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_3 | 0.62 | 45.0 | 4.42e-01 | 83.1% | 100.0% |
| 3264285 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.61 | 47.0 | 3.70e-01 | 87.7% | 71.6% |
| 3265492 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.60 | 47.0 | 4.80e-01 | 89.2% | 98.5% |
| 3209422 | 11.8.1.4 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like › Aegerolysin | 0.60 | 51.0 | 4.07e-01 | 100.0% | 68.3% |
| 3716927 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 42.0 | 3.45e-01 | 78.5% | 81.6% |
| 2061904 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.57 | 45.0 | 3.44e-01 | 89.2% | 75.4% |
| 5011108 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.57 | 44.0 | 3.87e-01 | 84.6% | 95.9% |
| 3551265 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.57 | 44.0 | 3.77e-01 | 86.2% | 85.5% |
| 3966822 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.57 | 45.0 | 3.49e-01 | 89.2% | 80.4% |
| 4375166 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.57 | 45.0 | 3.49e-01 | 89.2% | 85.2% |
| 3577757 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.56 | 43.0 | 3.56e-01 | 86.2% | 86.4% |
| 3947875 | 221.4.1.9 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 | 0.55 | 43.0 | 3.53e-01 | 89.2% | 66.9% |
| 3493717 | 11.1.1.1030 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-CFAP74_2 | 0.55 | 39.0 | 3.32e-01 | 76.9% | 74.8% |
| 1157836 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.52 | 41.0 | 3.33e-01 | 95.4% | 62.8% |
| 5069421 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.52 | 45.0 | 3.08e-01 | 100.0% | 36.3% |
| 4890538 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.51 | 39.0 | 2.92e-01 | 87.7% | 99.0% |
| 5021698 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.50 | 38.0 | 2.61e-01 | 84.6% | 77.0% |