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NC_029002.1__YP_009217730.1__AVV41_gp046__00046

Bact-Vir

Identity

Accession:: NC_029002 ↗
Kingdom:: phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fukuivirus› Microcystis_phage_MaMV-DC

TaxID: 1357715

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-67

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3asiA02	2.10.25.10	Mainly Beta › Ribbon › Laminin › Laminin	0.53	26.0	3.05e-01	93.9%	66.7%
7zj3D01	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.51	36.0	3.39e-01	75.8%	74.1%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3537046	1155.1.1.1 ↗	few secondary structure elements › Shisa 3 N-terminal domain › Shisa 3 N-terminal domain › Shisa 3 N-terminal domain › Shisa_N	0.52	29.0	3.19e-01	100.0%	66.0%
3618024	376.1.1.20 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX	0.52	36.0	3.51e-01	74.2%	84.0%

D2 high residues 77-161

PDB

Domain cluster: rep: MN695334.1__QGT54576.1__b3_0336__00318__D58-141

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7wu8B01	1.20.1160.20	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) ›	0.66	53.0	5.45e-01	94.1%	96.2%
3hwrA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.62	43.0	3.73e-01	71.8%	94.6%
3dtoA01	1.10.472.50	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like	0.55	46.0	4.62e-01	100.0%	93.2%
3deeA01	1.10.150.690	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063	0.55	43.0	4.33e-01	89.4%	83.7%
4nxiA00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.55	38.0	3.02e-01	74.1%	53.9%
2do9A01	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.54	41.0	4.19e-01	82.4%	100.0%
3iwfB00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	39.0	3.91e-01	77.6%	100.0%
4bx9C00	1.10.150.780	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Vps16, C-terminal region	0.53	37.0	3.58e-01	100.0%	63.2%
1g5aA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.53	36.0	3.47e-01	74.1%	61.9%
4z7xB00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.52	39.0	3.07e-01	87.1%	34.6%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4295608	633.16.1.0 ↗	alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like	0.67	54.0	5.37e-01	90.6%	92.2%
4681048	2004.1.1.439 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF26341	0.65	45.0	3.30e-01	71.8%	26.9%
4016004	5069.1.1.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes	0.57	45.0	3.58e-01	85.9%	75.0%
3485337	110.1.1.2 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD	0.57	43.0	4.14e-01	100.0%	70.0%
3205948	5069.1.1.7 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561	0.57	46.0	3.72e-01	91.8%	74.3%
3608092	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	44.0	3.49e-01	85.9%	60.6%
5000432	101.1.17.1 ↗	alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e	0.53	37.0	3.70e-01	75.3%	72.2%
4937811	150.1.1.7 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF892	0.52	46.0	3.73e-01	98.8%	83.1%
4028957	603.2.1.0 ↗	alpha bundles › STAT-like › STAT › STAT	0.52	37.0	3.05e-01	76.5%	81.8%
3345767	101.1.10.7 ↗	alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C	0.51	42.0	3.83e-01	97.6%	76.0%