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NC_029002.1__YP_009217748.1__AVV41_gp064__00064
Bact-VirNC_029002.1__YP_009217748.1__AVV41_gp064__00064
Identity
- Accession:
- NC_029002 ↗
- Kingdom:
- phage
Quality
64.1
mean pLDDT
Taxonomy
TaxID: 1357715
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-148
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4glaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 48.0 | 5.43e-01 | 99.2% | 93.3% |
| 3n54B01 | 6.20.190.10 | Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 | 0.69 | 27.0 | 3.74e-01 | 100.0% | 70.5% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 49.0 | 5.48e-01 | 95.8% | 96.7% |
| 5zg8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 50.0 | 5.34e-01 | 100.0% | 95.1% |
| 3f2bA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 47.0 | 5.16e-01 | 100.0% | 100.0% |
| 3nemA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 48.0 | 5.03e-01 | 100.0% | 92.4% |
| 1kqrA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 33.0 | 2.96e-01 | 100.0% | 37.5% |
| 6rupA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 50.0 | 5.11e-01 | 98.3% | 93.7% |
| 3vpbB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 40.0 | 4.16e-01 | 100.0% | 72.3% |
| 2xvsA00 | 2.40.50.550 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 48.0 | 4.29e-01 | 99.2% | 61.4% |
| 3m4pA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 49.0 | 5.00e-01 | 100.0% | 92.9% |
| 2i46A00 | 2.40.50.960 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 50.0 | 4.57e-01 | 100.0% | 70.4% |
| 4iwxA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.58 | 39.0 | 4.03e-01 | 100.0% | 72.1% |
| 4ah6A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 46.0 | 4.75e-01 | 100.0% | 88.6% |
| 1p3hB00 | 2.30.33.40 | Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin | 0.58 | 42.0 | 4.59e-01 | 90.7% | 91.8% |
| 4gnxC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 50.0 | 4.30e-01 | 96.6% | 85.2% |
| 5teaB00 | 3.90.80.10 | Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase | 0.54 | 43.0 | 3.79e-01 | 97.5% | 57.5% |
| 4jg2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 48.0 | 4.19e-01 | 100.0% | 83.2% |
| 1xjvA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 49.0 | 4.51e-01 | 99.2% | 79.9% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.52 | 39.0 | 3.87e-01 | 78.8% | 90.3% |
| 4h03A02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.52 | 41.0 | 3.48e-01 | 85.6% | 98.5% |
| 1qs1A02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.52 | 41.0 | 3.50e-01 | 85.6% | 97.0% |
| 1qz8A01 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.51 | 36.0 | 3.80e-01 | 76.3% | 81.0% |
| 5wtzA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.51 | 41.0 | 3.37e-01 | 86.4% | 93.4% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3730976 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 52.0 | 5.35e-01 | 100.0% | 79.1% |
| 3365669 | 2.1.1.229 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 | 0.71 | 56.0 | 5.80e-01 | 99.2% | 89.1% |
| 4441925 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.70 | 46.0 | 4.26e-01 | 100.0% | 53.8% |
| 4535633 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 43.0 | 5.17e-01 | 98.3% | 97.3% |
| 3943546 | 2.1.1.136 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3577 | 0.69 | 59.0 | 6.14e-01 | 99.2% | 98.2% |
| 3931676 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 50.0 | 4.92e-01 | 100.0% | 71.2% |
| 5004416 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 46.0 | 4.84e-01 | 97.5% | 76.2% |
| 4545465 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.68 | 40.0 | 4.87e-01 | 96.6% | 92.0% |
| 3583095 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 53.0 | 5.67e-01 | 99.2% | 96.0% |
| 4238279 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.66 | 56.0 | 5.75e-01 | 99.2% | 92.2% |
| 3741439 | 2.1.1.50 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TPP1 | 0.66 | 47.0 | 4.49e-01 | 100.0% | 62.9% |
| 3407899 | 2.1.1.29 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep-A_N | 0.65 | 48.0 | 4.72e-01 | 100.0% | 70.8% |
| 3716709 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 55.0 | 5.47e-01 | 100.0% | 88.6% |
| 3587188 | 2.1.1.33 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF961 | 0.64 | 50.0 | 5.26e-01 | 97.5% | 93.3% |
| 3346797 | 2.1.1.71 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TTC5_OB | 0.64 | 52.0 | 4.91e-01 | 99.2% | 72.1% |
| 5053650 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.63 | 49.0 | 4.87e-01 | 100.0% | 77.6% |
| 4478491 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.63 | 51.0 | 5.36e-01 | 99.2% | 98.1% |
| 3179184 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 44.0 | 4.95e-01 | 100.0% | 96.7% |
| 3646876 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.62 | 34.0 | 3.82e-01 | 96.6% | 68.4% |
| 3667392 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.61 | 54.0 | 5.50e-01 | 99.2% | 98.3% |
| 3991355 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.61 | 48.0 | 5.03e-01 | 100.0% | 89.1% |
| 5026964 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.61 | 47.0 | 5.11e-01 | 100.0% | 97.0% |
| 4970675 | 2.1.1.224 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 | 0.61 | 44.0 | 4.45e-01 | 99.2% | 74.2% |
| 3057784 | 2.1.1.71 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TTC5_OB | 0.61 | 49.0 | 4.30e-01 | 99.2% | 57.6% |
| 4929836 | 2.1.1.190 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Nre_N | 0.60 | 52.0 | 5.06e-01 | 99.2% | 84.6% |
| 5015366 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.60 | 39.0 | 3.39e-01 | 100.0% | 41.1% |
| 3932593 | 2.1.1.179 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N | 0.60 | 50.0 | 5.33e-01 | 95.8% | 100.0% |
| None | — | 0.60 | 41.0 | 3.34e-01 | 100.0% | 37.3% | |
| 5012899 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 50.0 | 5.23e-01 | 100.0% | 97.3% |
| 3365075 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.59 | 41.0 | 3.25e-01 | 100.0% | 33.6% |
| 138604 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.59 | 49.0 | 5.09e-01 | 100.0% | 97.2% |
| 3701262 | 2.1.1.225 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 | 0.59 | 53.0 | 5.21e-01 | 100.0% | 92.3% |
| 3829071 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 47.0 | 4.97e-01 | 98.3% | 95.2% |
| 5052151 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.59 | 49.0 | 5.00e-01 | 98.3% | 92.2% |
| 4991697 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.58 | 45.0 | 4.63e-01 | 99.2% | 85.1% |
| 5011365 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.58 | 39.0 | 3.29e-01 | 100.0% | 39.0% |
| 5076505 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.58 | 48.0 | 4.50e-01 | 100.0% | 73.6% |
| 4928453 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.58 | 39.0 | 2.98e-01 | 100.0% | 28.9% |
| 3991473 | 2.1.1.138 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › ATG11 | 0.58 | 45.0 | 4.80e-01 | 97.5% | 93.3% |
| 4928041 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.58 | 39.0 | 2.98e-01 | 100.0% | 28.9% |
| 4653759 | 2.1.1.190 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Nre_N | 0.57 | 52.0 | 4.44e-01 | 99.2% | 65.8% |
| 3719166 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 50.0 | 4.90e-01 | 100.0% | 89.6% |
| 3858483 | 2.1.1.72 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC | 0.56 | 50.0 | 4.57e-01 | 100.0% | 85.0% |
| 4009092 | 2.1.1.139 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Slp | 0.56 | 50.0 | 4.97e-01 | 100.0% | 92.8% |
| 4026302 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.56 | 48.0 | 4.50e-01 | 100.0% | 75.9% |
| 4020700 | 2.1.1.72 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC | 0.55 | 51.0 | 4.62e-01 | 100.0% | 77.4% |
| 3948921 | 2.1.1.139 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Slp | 0.55 | 50.0 | 4.91e-01 | 100.0% | 92.0% |
| 3184493 | 2.1.1.59 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1 | 0.54 | 49.0 | 4.62e-01 | 100.0% | 85.7% |
| 3947390 | 2.5.1.1 ↗ | beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase | 0.53 | 43.0 | 3.89e-01 | 96.6% | 62.4% |
| 3649141 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 47.0 | 4.61e-01 | 100.0% | 87.7% |
| 4950417 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 47.0 | 4.05e-01 | 100.0% | 62.1% |
| 4588347 | 206.1.3.25 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 | 0.52 | 46.0 | 3.36e-01 | 100.0% | 48.3% |
| 3647198 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.51 | 23.0 | 3.04e-01 | 91.5% | 78.3% |