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NC_029002.1__YP_009217771.1__AVV41_gp087__00087

Bact-Vir

NC_029002.1__YP_009217771.1__AVV41_gp087__00087

Identity

Accession:
NC_029002 ↗
Kingdom:
phage

Quality

68.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fukuivirus› Microcystis_phage_MaMV-DC

TaxID: 1357715

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 56-67_91-174
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03864.23 best Phage_cap_E 23.0 5.40e-05 88.5% 21.3%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.69 36.0 3.68e-01 96.9% 51.6%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 50.0 3.62e-01 97.9% 67.7%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.51 28.0 2.81e-01 79.2% 50.0%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.50 24.0 2.93e-01 80.2% 70.2%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.69 36.0 3.68e-01 96.9% 51.6%
5072826 878.1.1.0 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.56 40.0 4.21e-01 75.0% 100.0%
4822624 3532.1.1.1 ↗ alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase › Telomerase_RBD 0.54 41.0 3.27e-01 81.2% 43.8%
3964249 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.53 25.0 3.06e-01 79.2% 70.0%
3719707 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 36.0 2.73e-01 72.9% 50.6%
D2 medium residues 175-269_303-360_407-434
PDB
Domain cluster: rep: NC_062753.1__YP_010357483.1__M1M31_gp41__00041__D163-291_335-364
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ohgA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.78 46.0 5.93e-01 92.3% 100.0%
3bqwA02 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.73 54.0 6.20e-01 90.6% 100.0%
6xgpB01 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.70 51.0 5.84e-01 87.8% 100.0%
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.66 44.0 5.28e-01 92.3% 100.0%
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.63 56.0 4.63e-01 92.8% 59.1%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.54 26.0 3.46e-01 93.4% 85.1%
2di8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 28.0 3.70e-01 94.5% 95.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 18.0 2.90e-01 85.6% 87.1%
5fc9A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.50 25.0 3.32e-01 92.8% 88.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
333200 2485.3.1.1 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.64 57.0 4.71e-01 94.5% 78.9%
2443966 2485.3.1.1 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.61 55.0 4.17e-01 96.1% 58.4%
4675024 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.59 25.0 3.46e-01 95.0% 78.6%
4318302 896.1.1.6 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DUF2303 0.59 24.0 3.26e-01 94.5% 70.2%
3578732 300.1.1.2 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II 0.57 37.0 3.89e-01 92.3% 70.9%
4111598 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.56 20.0 3.11e-01 93.4% 77.3%
2989372 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.54 47.0 3.85e-01 90.6% 54.9%
3075730 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.54 47.0 3.83e-01 92.8% 58.7%
3513770 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.53 46.0 3.86e-01 90.6% 58.1%
3287295 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 23.0 3.16e-01 71.3% 78.9%
2989363 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.53 46.0 3.80e-01 91.2% 55.8%
3652056 377.1.1.12 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.51 27.0 2.69e-01 100.0% 46.5%
3361555 377.1.1.12 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 0.50 26.0 3.05e-01 100.0% 68.8%