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NC_029002.1__YP_009217788.1__AVV41_gp104__00104

Bact-Vir

NC_029002.1__YP_009217788.1__AVV41_gp104__00104

Identity

Accession:
NC_029002 ↗
Kingdom:
phage

Quality

75.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fukuivirus› Microcystis_phage_MaMV-DC

TaxID: 1357715

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-89
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ffbC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 58.0 4.35e-01 98.9% 43.3%
3au4A01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.65 55.0 4.29e-01 93.3% 61.7%
3dadA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 57.0 3.92e-01 98.9% 27.5%
3b34A05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.64 56.0 3.84e-01 98.9% 28.9%
3l6aA01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 55.0 4.40e-01 98.9% 47.9%
3wozB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 54.0 4.03e-01 98.9% 38.9%
7wu8B01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.61 43.0 4.58e-01 83.1% 83.5%
6xssA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 44.0 4.91e-01 95.5% 98.6%
2lvfA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.61 48.0 4.46e-01 87.6% 94.7%
1e7uA05 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.60 51.0 4.05e-01 95.5% 95.8%
3qdnA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 45.0 4.61e-01 98.9% 84.5%
7tj4A01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 49.0 4.42e-01 100.0% 65.0%
2i9cA01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.58 47.0 4.45e-01 100.0% 73.9%
2fo7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 43.0 3.81e-01 98.9% 52.9%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.57 48.0 4.44e-01 96.6% 94.2%
3pvlA01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.57 49.0 3.83e-01 100.0% 73.1%
2g7sA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 47.0 3.74e-01 94.4% 84.7%
2ff4A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 43.0 3.58e-01 98.9% 43.4%
4n5cD06 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 48.0 4.48e-01 96.6% 93.8%
3ccyA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 45.0 3.79e-01 87.6% 77.6%
5jjxA01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 44.0 3.23e-01 96.6% 29.3%
4zhbA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.54 45.0 4.30e-01 95.5% 80.8%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.54 46.0 4.35e-01 98.9% 90.2%
4gywA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 44.0 4.16e-01 100.0% 73.9%
3qkyA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 47.0 3.43e-01 98.9% 35.5%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 46.0 3.90e-01 98.9% 75.9%
5fzsA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 43.0 4.12e-01 98.9% 75.7%
2xevB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 45.0 4.11e-01 100.0% 88.7%
3tahA02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 33.0 3.36e-01 80.9% 65.9%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3627564 109.4.1.460 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_C 0.70 62.0 4.51e-01 98.9% 40.0%
3514264 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 62.0 3.53e-01 98.9% 12.5%
3166742 109.4.1.460 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_C 0.70 62.0 4.75e-01 98.9% 46.0%
3713580 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.67 57.0 3.39e-01 98.9% 13.0%
3939372 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 59.0 4.60e-01 100.0% 73.3%
3901398 109.4.1.31 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 0.65 56.0 4.37e-01 98.9% 44.4%
3391548 109.4.1.901 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1 0.65 56.0 4.69e-01 98.9% 60.6%
3275037 109.6.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.64 56.0 3.67e-01 100.0% 39.8%
3676983 109.4.1.957 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TTI1_N 0.64 54.0 5.24e-01 95.5% 90.0%
3637954 109.4.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.63 55.0 3.62e-01 100.0% 23.0%
3632858 109.4.1.1329 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20, PF31234 0.63 54.0 3.11e-01 96.6% 36.6%
3659084 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.63 53.0 4.09e-01 98.9% 40.5%
4012147 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 53.0 3.56e-01 98.9% 23.3%
3492535 109.4.1.2754 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14, TPR_19, HAT_PRP39_N, PF29376 0.62 53.0 3.35e-01 98.9% 18.2%
1688094 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 43.0 4.84e-01 98.9% 100.0%
3584111 109.4.1.19 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vitellogenin_N 0.62 51.0 4.37e-01 98.9% 54.7%
3238049 109.4.1.546 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ecm29 0.61 53.0 4.31e-01 98.9% 52.2%
3903481 109.4.1.14 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MyTH4 0.61 53.0 4.07e-01 100.0% 40.9%
3656261 109.4.1.957 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TTI1_N 0.60 51.0 4.20e-01 98.9% 83.9%
4187512 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 47.0 4.35e-01 91.0% 66.1%
4006685 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.60 47.0 3.18e-01 91.0% 22.4%
3564606 604.1.1.60 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Stereocilin 0.59 53.0 4.30e-01 100.0% 92.9%
3673236 109.4.1.621 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 0.59 48.0 4.41e-01 100.0% 67.0%
3222673 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.59 52.0 4.19e-01 100.0% 54.4%
3848926 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.58 50.0 4.09e-01 100.0% 74.4%
4024604 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 51.0 4.75e-01 98.9% 88.2%
3257258 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 47.0 4.67e-01 94.4% 85.3%
1346255 6140.1.1.1 ↗ alpha superhelices › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Sld3_STD 0.57 47.0 4.10e-01 93.3% 95.0%
5004436 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 49.0 4.00e-01 100.0% 51.4%
3623065 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 49.0 3.39e-01 100.0% 40.0%
3444721 603.1.1.6 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.55 47.0 3.72e-01 97.8% 97.4%
3195084 109.4.1.1390 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31234 0.53 45.0 3.29e-01 98.9% 67.1%
3712352 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.53 44.0 3.47e-01 100.0% 41.0%
3618422 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 46.0 2.78e-01 98.9% 26.3%
3615358 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.52 46.0 2.77e-01 100.0% 14.8%
3591466 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.51 46.0 2.87e-01 100.0% 53.3%
3621553 109.4.1.362 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8 0.51 45.0 3.15e-01 100.0% 39.0%