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NC_029002.1__YP_009217789.1__AVV41_gp105__00105

Bact-Vir

Identity

Accession:: NC_029002 ↗
Kingdom:: phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fukuivirus› Microcystis_phage_MaMV-DC

TaxID: 1357715

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 486-574

PDB

Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6o38A04	2.60.120.1230	Mainly Beta › Sandwich › Jelly Rolls ›	0.77	69.0	6.92e-01	100.0%	95.5%
6o38A02	2.60.120.1230	Mainly Beta › Sandwich › Jelly Rolls ›	0.70	64.0	6.33e-01	100.0%	98.9%
6o38A01	2.60.120.1230	Mainly Beta › Sandwich › Jelly Rolls ›	0.69	63.0	6.24e-01	100.0%	98.9%
6o38A03	2.60.120.1230	Mainly Beta › Sandwich › Jelly Rolls ›	0.69	58.0	6.04e-01	94.4%	98.8%
1xa6A01	3.30.505.10	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain	0.62	40.0	3.80e-01	100.0%	55.8%
1x0cA02	2.160.20.10	Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like	0.57	49.0	3.33e-01	100.0%	40.6%
3nkdA01	3.100.10.20	Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain	0.55	39.0	4.03e-01	75.3%	94.0%
6ulwA01	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.55	47.0	3.15e-01	97.8%	35.0%
2hy1A00	3.60.21.10	Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases	0.54	44.0	3.34e-01	89.9%	42.7%
7chuA01	2.160.20.10	Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like	0.54	47.0	3.17e-01	100.0%	24.4%
5fclE01	3.100.10.20	Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain	0.54	38.0	3.80e-01	74.2%	88.9%
4wd1A01	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.53	46.0	2.98e-01	97.8%	24.1%
2nxfA01	3.60.21.10	Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases	0.52	42.0	2.93e-01	88.8%	50.3%
2v7bA01	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.52	46.0	3.02e-01	100.0%	44.6%
4rcmB00	3.10.590.10	Alpha Beta › Roll › ph1033 like fold › ph1033 like domains	0.52	36.0	3.00e-01	71.9%	56.6%
3g7sA01	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.50	38.0	2.53e-01	84.3%	65.4%
2vsqA03	3.40.50.980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.50	43.0	3.46e-01	98.9%	48.9%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2581340	520.2.1.1 ↗	beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich	0.77	69.0	6.99e-01	100.0%	97.7%
2581338	520.2.1.1 ↗	beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich	0.70	64.0	6.24e-01	100.0%	95.8%
2581339	520.2.1.1 ↗	beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich	0.70	63.0	6.20e-01	100.0%	95.7%
2581337	520.2.1.1 ↗	beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich	0.69	63.0	6.22e-01	100.0%	97.8%
4937314	520.2.1.0 ↗	beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE	0.65	45.0	4.78e-01	70.8%	98.7%
4019883	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.56	48.0	3.45e-01	97.8%	71.3%
4307705	2003.6.1.1 ↗	a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB	0.55	42.0	2.84e-01	80.9%	26.9%
3964913	207.2.1.10 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin	0.55	49.0	4.19e-01	100.0%	73.8%
173315	246.2.1.1 ↗	a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos	0.55	44.0	3.15e-01	88.8%	35.6%
3485798	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	45.0	3.86e-01	93.3%	77.3%
4991651	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.53	46.0	3.33e-01	96.6%	66.9%
3794010	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.52	44.0	2.81e-01	95.5%	35.1%

D2 medium residues 335-390

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3n29B01	2.40.37.10	Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1	0.52	36.0	2.67e-01	73.2%	27.8%
2b0uD02	3.30.60.30	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 ›	0.52	35.0	3.28e-01	98.2%	55.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3621418	389.1.1.7 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA	0.66	41.0	4.31e-01	75.0%	70.0%

D3 medium residues 425-479

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3512515	247.1.1.45 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, RMMBL, Lactamase_B_2	0.51	39.0	2.56e-01	94.5%	51.7%