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NC_029002.1__YP_009217806.1__AVV41_gp122__00122

Bact-Vir

NC_029002.1__YP_009217806.1__AVV41_gp122__00122

Identity

Accession:
NC_029002 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fukuivirus› Microcystis_phage_MaMV-DC

TaxID: 1357715

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-101
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 52.0 6.35e-01 74.0% 98.4%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 55.0 6.01e-01 80.2% 82.5%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 57.0 5.53e-01 95.8% 65.7%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 52.0 6.10e-01 78.1% 96.9%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.76 55.0 4.90e-01 75.0% 69.5%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 5.29e-01 82.3% 81.2%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.72 43.0 3.78e-01 75.0% 40.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 5.13e-01 82.3% 77.0%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.72 67.0 5.75e-01 99.0% 98.6%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 50.0 5.11e-01 93.8% 75.5%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 52.0 4.00e-01 88.5% 62.1%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.61 40.0 4.44e-01 96.9% 84.2%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.94e-01 80.2% 73.6%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 40.0 4.53e-01 95.8% 93.2%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 48.0 4.28e-01 88.5% 69.2%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.57 36.0 3.25e-01 90.6% 44.0%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 46.0 4.49e-01 88.5% 81.1%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.55 38.0 4.21e-01 70.8% 97.3%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 42.0 4.06e-01 97.9% 75.7%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 35.0 4.10e-01 87.5% 98.5%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 33.0 2.89e-01 91.7% 41.8%
1oahA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 41.0 3.62e-01 96.9% 59.2%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974736 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.85 57.0 6.04e-01 79.2% 76.5%
None — 0.85 56.0 5.30e-01 90.6% 58.2%
3163613 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.85 59.0 6.82e-01 80.2% 98.6%
4304581 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.85 58.0 5.87e-01 94.8% 71.3%
4175748 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 56.0 6.13e-01 80.2% 82.5%
3284011 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 55.0 6.43e-01 79.2% 92.9%
3951829 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.84 56.0 5.97e-01 80.2% 77.6%
3284461 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 57.0 4.07e-01 81.2% 26.8%
3288971 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.83 56.0 4.75e-01 80.2% 44.0%
4037682 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.83 56.0 5.55e-01 91.7% 66.0%
None — 0.83 54.0 5.21e-01 90.6% 58.7%
4683324 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.83 54.0 5.17e-01 90.6% 58.2%
None — 0.83 55.0 3.96e-01 80.2% 26.5%
4470607 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.83 58.0 5.41e-01 95.8% 60.0%
4031535 101.1.1.275 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.83 51.0 6.31e-01 77.1% 100.0%
3288090 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 56.0 6.49e-01 82.3% 95.7%
4146353 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 54.0 5.88e-01 79.2% 80.0%
3284984 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.82 57.0 4.08e-01 82.3% 26.8%
4238054 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.82 55.0 3.95e-01 80.2% 26.5%
None — 0.82 55.0 5.37e-01 91.7% 62.9%
3973360 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 57.0 6.59e-01 78.1% 97.1%
4148347 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.82 54.0 5.23e-01 90.6% 61.5%
None — 0.82 56.0 5.72e-01 94.8% 71.6%
3284051 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.82 52.0 6.21e-01 81.2% 95.4%
3971149 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 58.0 6.28e-01 81.2% 87.5%
3955987 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 54.0 5.46e-01 83.3% 68.4%
3163616 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 58.0 5.85e-01 74.0% 79.8%
None — 0.80 56.0 5.43e-01 95.8% 65.7%
3291331 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.80 54.0 5.92e-01 80.2% 83.7%
4140444 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.80 56.0 5.37e-01 95.8% 63.6%
4202221 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.79 51.0 6.02e-01 81.2% 92.6%
4439853 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 53.0 6.14e-01 81.2% 94.3%
4237551 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 55.0 5.60e-01 82.3% 72.6%
4497189 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.79 50.0 6.00e-01 78.1% 95.4%
None — 0.78 56.0 5.34e-01 95.8% 64.5%
4034200 101.1.1.275 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.78 49.0 5.79e-01 78.1% 93.8%
3959868 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 51.0 5.72e-01 80.2% 85.3%
3289947 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 52.0 5.61e-01 83.3% 81.2%
2813289 101.1.1.71 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.78 53.0 5.30e-01 90.6% 69.1%
4372550 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 56.0 5.78e-01 83.3% 78.9%
3971665 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 53.0 5.95e-01 78.1% 90.7%
3977260 101.1.1.39 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Phage_antitermQ 0.77 72.0 6.60e-01 99.0% 95.8%
4458444 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 57.0 5.78e-01 82.3% 77.9%
4530655 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 53.0 5.26e-01 83.3% 68.0%
3283863 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 52.0 5.40e-01 82.3% 74.4%
3282225 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 55.0 6.03e-01 80.2% 90.0%
2464007 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 49.0 5.83e-01 79.2% 95.5%
3587538 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.76 49.0 5.71e-01 81.2% 92.6%
2817645 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.76 60.0 6.58e-01 96.9% 100.0%
4456068 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.76 61.0 6.01e-01 95.8% 81.0%
4034281 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 68.0 6.53e-01 96.9% 90.9%
4663875 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.75 52.0 3.81e-01 79.2% 28.3%
1810916 101.1.1.71 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.75 49.0 5.81e-01 89.6% 100.0%
3284292 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.74 49.0 5.09e-01 81.2% 72.2%
4033888 101.1.1.489 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF722 0.74 64.0 5.73e-01 92.7% 100.0%
3959876 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.73 54.0 5.39e-01 78.1% 80.0%
3279339 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.73 49.0 3.93e-01 81.2% 35.7%
4862439 101.1.1.71 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.72 51.0 4.98e-01 96.9% 66.4%
3289886 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.72 50.0 4.89e-01 77.1% 65.7%
3972713 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 54.0 5.44e-01 80.2% 78.9%
3291186 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.71 47.0 4.64e-01 82.3% 62.9%
4129689 101.1.1.22 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PapB 0.70 54.0 5.95e-01 99.0% 98.7%
4024517 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.70 58.0 5.45e-01 100.0% 73.9%
4683276 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 48.0 4.86e-01 82.3% 71.6%
4142399 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.69 48.0 4.95e-01 77.1% 75.6%
4982527 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 55.0 5.46e-01 97.9% 82.0%
3283074 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 47.0 4.96e-01 78.1% 81.2%
3982095 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.67 49.0 4.90e-01 78.1% 74.5%
4577850 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.65 60.0 5.97e-01 97.9% 100.0%
3973709 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.65 58.0 5.67e-01 99.0% 88.6%
3182958 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.64 59.0 5.18e-01 99.0% 81.5%
3620216 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 49.0 5.21e-01 92.7% 92.9%
3913655 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.63 49.0 5.35e-01 83.3% 97.5%
3625029 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 50.0 4.85e-01 96.9% 83.8%
D2 medium residues 110-142
PDB