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NC_029002.1__YP_009217854.1__AVV41_gp170__00170

Bact-Vir

NC_029002.1__YP_009217854.1__AVV41_gp170__00170

Identity

Accession:
NC_029002 ↗
Kingdom:
phage

Quality

64.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fukuivirus› Microcystis_phage_MaMV-DC

TaxID: 1357715

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-123
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6wgyA02 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.66 48.0 4.19e-01 78.5% 56.4%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.61 45.0 4.05e-01 81.5% 95.9%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.61 43.0 3.99e-01 76.9% 64.0%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.61 40.0 4.09e-01 81.5% 69.2%
1nxuA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.59 46.0 4.36e-01 87.7% 75.9%
5l3wA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.56 43.0 4.06e-01 86.2% 69.0%
5gj7A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.56 44.0 3.59e-01 86.2% 55.2%
1wgnA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 36.0 3.71e-01 86.2% 73.0%
2iylD01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.53 42.0 4.24e-01 92.3% 89.2%
3mizB02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 38.0 2.99e-01 76.9% 97.3%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 33.0 3.62e-01 90.8% 80.0%
1bvsF03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 35.0 3.86e-01 83.1% 100.0%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 40.0 2.74e-01 86.2% 93.0%
2itaA01 1.20.5.920 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › rhodobacter sphaeroides pufx membrane protein 0.51 26.0 2.82e-01 80.0% 53.6%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5059485 7076.1.1.0 ↗ 0.71 51.0 5.48e-01 76.9% 94.5%
5059134 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.68 49.0 5.07e-01 76.9% 90.0%
5059274 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.67 50.0 5.04e-01 80.0% 87.7%
5054075 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.64 45.0 4.71e-01 76.9% 90.0%
5017820 2002.1.1.173 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GH123_cat 0.63 51.0 3.32e-01 92.3% 98.4%
3603627 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.61 45.0 4.34e-01 80.0% 76.0%
3364032 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.59 41.0 4.56e-01 86.2% 94.0%
3979925 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 43.0 3.18e-01 84.6% 78.5%
4203362 181.1.1.15 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › PF29197 0.57 42.0 4.41e-01 84.6% 96.4%
4952067 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.57 42.0 4.23e-01 84.6% 80.0%
3867244 4953.1.1.37 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › DUF4603 0.57 42.0 3.91e-01 96.9% 62.7%
3599525 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 47.0 3.54e-01 100.0% 48.0%
4516639 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.55 44.0 4.45e-01 100.0% 95.2%
3245000 4338.1.1.0 ↗ alpha complex topology › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like 0.55 45.0 4.11e-01 90.8% 74.1%
3966077 101.26.1.1 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.54 37.0 3.64e-01 89.2% 65.7%
3686464 3721.1.1.0 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain 0.54 38.0 3.66e-01 76.9% 64.0%
3186778 103.11.1.1 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N 0.53 39.0 4.13e-01 84.6% 92.7%
3517113 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.53 33.0 3.80e-01 80.0% 91.1%
3743460 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 35.0 3.75e-01 72.3% 80.0%
3800788 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.53 35.0 3.29e-01 89.2% 55.0%
None — 0.52 39.0 2.60e-01 78.5% 91.5%
3270733 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.52 40.0 3.73e-01 87.7% 84.7%
5003693 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 32.0 3.23e-01 86.2% 60.0%
2724457 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.51 35.0 3.84e-01 87.7% 97.9%
5054797 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.51 38.0 3.88e-01 90.8% 90.0%
4937880 2004.1.1.191 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.50 41.0 3.11e-01 93.8% 100.0%
D2 high residues 129-208
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2auaA01 3.20.170.10 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › ADP-ribosylation domain 0.74 68.0 6.09e-01 100.0% 88.9%
4eyyQ02 3.20.170.50 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Dot/Icm secretion system IcmQ, C-terminal domain 0.67 60.0 5.34e-01 100.0% 86.0%
2zotC00 2.60.40.4060 Mainly Beta › Sandwich › Immunoglobulin-like › Reeler domain 0.56 42.0 3.53e-01 81.2% 61.4%
3kdgA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.55 33.0 3.19e-01 77.5% 51.1%
3dclA01 2.102.30.10 Mainly Beta › 3-layer Sandwich › tm1086 (SG structure) fold › tm1086 (SG structure) domain 0.55 36.0 2.95e-01 100.0% 35.3%
1ev7A01 3.40.600.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II 0.54 35.0 2.83e-01 100.0% 32.3%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 3.56e-01 100.0% 59.8%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 27.0 2.89e-01 100.0% 57.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995698 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.76 70.0 6.44e-01 100.0% 100.0%
4189981 2008.1.1.37 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NaeI 0.54 36.0 2.78e-01 100.0% 29.2%
4084968 4167.1.1.1 ↗ beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.52 45.0 3.76e-01 97.5% 79.3%
3594431 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.51 38.0 3.42e-01 77.5% 82.7%
1320672 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.51 40.0 2.89e-01 88.7% 77.9%
3252646 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.50 43.0 3.70e-01 100.0% 68.6%
3973696 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 41.0 3.57e-01 91.3% 69.6%
D3 medium residues 1-55
PDB