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NC_029007.1__YP_009218127.1__AVU43_gp35__00035

Bact-Vir

NC_029007.1__YP_009218127.1__AVU43_gp35__00035

Identity

Accession:
NC_029007 ↗
Kingdom:
phage

Quality

56.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Risjevirus› Ralstonia_phage_RSJ5

TaxID: 1538364

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-135
PDB
Domain cluster: rep: MZ326863.1__QYW02339.1__CPT_Paku_045__00045__D5-122
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01464.26 best SLT 30.5 3.30e-07 91.7% 84.6%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.83 75.0 7.01e-01 94.7% 85.4%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.82 74.0 6.68e-01 94.7% 81.5%
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.80 72.0 6.62e-01 94.7% 95.2%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 71.0 6.32e-01 94.7% 87.4%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 71.0 6.29e-01 95.5% 99.5%
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.78 70.0 6.47e-01 93.2% 87.0%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.77 69.0 6.54e-01 94.7% 86.9%
7k5cB01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.75 66.0 6.15e-01 91.7% 81.8%
153lA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.75 68.0 5.98e-01 94.7% 69.7%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.74 66.0 6.17e-01 94.0% 88.7%
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.69 53.0 5.56e-01 94.7% 90.7%
3fi7A01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.67 53.0 5.36e-01 94.7% 83.8%
4fdyA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.66 59.0 5.49e-01 94.7% 91.9%
4kt3A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.65 54.0 5.36e-01 94.7% 84.4%
1am7A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.62 57.0 5.41e-01 100.0% 92.9%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 42.0 4.67e-01 89.5% 99.0%
2lwxA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.51 28.0 3.29e-01 73.7% 76.1%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3985073 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 74.0 7.41e-01 95.5% 88.9%
3945171 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 73.0 7.10e-01 94.7% 82.8%
4942484 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 76.0 6.55e-01 94.7% 83.4%
3947473 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 74.0 7.06e-01 95.5% 81.3%
3965879 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.83 75.0 6.90e-01 94.7% 81.8%
4010532 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 73.0 7.41e-01 93.2% 96.2%
3970721 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.82 74.0 6.68e-01 95.5% 80.0%
4431057 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 74.0 7.22e-01 95.5% 88.3%
3941811 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.82 74.0 6.71e-01 94.7% 83.5%
3947025 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.79 71.0 6.49e-01 94.0% 85.7%
3839391 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.79 72.0 6.74e-01 94.7% 82.6%
3969917 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.77 70.0 5.97e-01 94.7% 68.0%
3839661 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.77 69.0 6.28e-01 94.7% 83.5%
1005039 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.76 69.0 6.45e-01 94.7% 84.2%
1266923 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.76 69.0 6.57e-01 94.7% 88.1%
3942480 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.76 67.0 6.36e-01 94.0% 95.5%
3964630 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.76 72.0 6.63e-01 100.0% 87.8%
3966371 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.74 67.0 4.98e-01 94.7% 73.3%
2647598 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.73 66.0 5.88e-01 95.5% 86.3%
5029852 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.70 60.0 5.63e-01 94.7% 75.6%
1147708 235.1.1.2 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 0.69 60.0 5.15e-01 94.7% 87.5%
None — 0.67 61.0 5.52e-01 94.7% 92.4%
3728943 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.66 55.0 5.07e-01 94.7% 69.4%
1693577 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.65 57.0 4.68e-01 94.7% 55.1%
4443068 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.61 54.0 4.50e-01 94.7% 56.9%
D2 high residues 775-902
PDB
D3 medium residues 287-396
PDB
D4 medium residues 597-658_948-971
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 46.0 3.91e-01 96.5% 93.1%
D5 medium residues 972-995_1052-1090
PDB
D6 medium residues 996-1051_1091-1192
PDB
D7 medium residues 1193-1244
PDB