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YP_009218474.1

Arc-Vir

NC_029011__YP_009218474.1__AVT99-gp10__00010

Identity

Accession:: NC_029011 ↗
Protein ID:: YP_009218474.1 ↗
Kingdom:: archaea

Quality

62.9 mean pLDDT

Taxonomy

Bicaudaviridae› Sulfolobus_monocaudavirus_SMV4

TaxID: 1732178

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 778-851_853-855_857-871_873-877_879-907

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8d3mA02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.63	43.0	3.55e-01	71.4%	65.0%
2q7rB00	1.20.120.550	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain	0.60	45.0	4.35e-01	80.2%	74.1%
2nr9A00	1.20.1540.10	Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like	0.59	49.0	4.26e-01	88.1%	93.2%
8sbeA02	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.59	43.0	3.78e-01	74.6%	95.2%
2mgyA01	1.20.1260.100	Mainly Alpha › Up-down Bundle › Ferritin › TspO/MBR protein	0.59	46.0	4.29e-01	83.3%	83.1%
2uuiA00	1.20.120.550	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain	0.58	44.0	4.13e-01	80.2%	70.3%
2pv4A00	1.10.3440.10	Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like	0.57	43.0	4.09e-01	78.6%	75.2%
4zudA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.57	41.0	3.28e-01	74.6%	53.9%
3ripA02	1.20.120.1900	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain	0.56	50.0	3.90e-01	100.0%	92.1%
6l1xA01	1.20.210.10	Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain	0.54	47.0	3.20e-01	98.4%	86.1%
4bemJ00	1.20.120.610	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase	0.53	41.0	3.68e-01	82.5%	67.4%
2bl2A00	1.20.120.610	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase	0.53	40.0	3.76e-01	80.2%	73.7%
1xwmA00	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.53	40.0	3.38e-01	80.2%	87.7%
4o6mA02	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.51	42.0	3.70e-01	89.7%	75.4%
3i1aA03	1.20.58.840	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	37.0	3.85e-01	75.4%	96.6%
1y8aA02	1.10.3870.10	Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily	0.50	40.0	4.13e-01	84.9%	92.2%

ECOD (30)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4966460	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.72	45.0	4.98e-01	75.4%	78.0%
3279977	1075.5.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter	0.70	52.0	4.40e-01	78.6%	87.5%
4972429	1075.5.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter	0.67	50.0	3.95e-01	78.6%	68.3%
4030905	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.66	47.0	4.07e-01	73.8%	85.0%
3973728	101.1.2.848 ↗	alpha arrays › HTH › HTH › winged helix domain › GDH_C	0.66	49.0	5.02e-01	77.0%	95.8%
3599438	3352.1.1.0 ↗	alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain	0.66	54.0	3.90e-01	88.1%	88.3%
5046308	1075.5.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter	0.65	48.0	3.87e-01	78.6%	71.0%
3188909	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.65	46.0	3.53e-01	73.0%	57.2%
1746268	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.64	58.0	5.18e-01	100.0%	81.4%
4026288	1075.5.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter	0.63	48.0	4.02e-01	80.2%	86.3%
4018950	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.63	45.0	3.58e-01	74.6%	61.9%
3989173	1075.5.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE	0.62	46.0	3.83e-01	77.8%	83.6%
3407685	5038.2.1.1 ↗	alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG	0.61	44.0	4.33e-01	74.6%	94.1%
3984760	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.60	45.0	3.67e-01	78.6%	82.1%
1148151	3861.1.1.1 ↗	alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › TspO_MBR	0.59	46.0	4.21e-01	83.3%	78.7%
4952829	160.1.1.0 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase	0.58	48.0	4.51e-01	90.5%	93.8%
4211330	3755.4.1.5 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Dynactin	0.58	43.0	3.85e-01	77.0%	71.7%
5069342	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.58	41.0	3.67e-01	73.8%	86.8%
4952828	5038.2.1.0 ↗	alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like	0.58	48.0	4.56e-01	89.7%	95.3%
3926303	611.8.1.0 ↗	alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1	0.57	42.0	3.95e-01	77.8%	75.0%
4463005	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.57	40.0	3.50e-01	72.2%	51.3%
4176577	601.1.2.3 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › GCIP_C	0.57	42.0	4.20e-01	77.8%	93.8%
4015361	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.56	46.0	4.28e-01	88.1%	94.4%
5037027	5041.1.1.1 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C	0.56	43.0	4.07e-01	80.2%	91.3%
3545649	7579.1.1.66 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › HSL_N	0.56	46.0	3.81e-01	88.1%	77.3%
3942475	628.1.1.1 ↗	alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD	0.55	41.0	3.88e-01	77.8%	65.8%
4031155	1174.1.1.2 ↗	alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 › LtrA	0.55	44.0	3.92e-01	86.5%	74.6%
3340407	611.7.1.14 ↗	alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › DUF7792	0.53	43.0	4.04e-01	88.1%	85.0%
3227811	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.51	37.0	3.48e-01	74.6%	78.1%
4003426	601.1.2.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608)	0.51	38.0	3.54e-01	77.8%	71.0%

D2 high residues 917-928_930-1015_1052-1068

PDB

D3 medium residues 1-175

PDB

D4 medium residues 262-311_446-508

PDB

Domain cluster: rep: IMGVR_UViG_3300027932_000064-3300027932-Ga0208429_1000321__D1161-1222_1350-1427

D5 medium residues 312-445

PDB

Domain cluster: rep: NC_029103__YP_009226233.1__AXI69-gp10__00010__D87-95_102-103_106-118_120-127_132-133_135-143_145-156_158-159_161-173_176-177_185-186_188-192_194-215

D6 medium residues 520-541_543-582_584-590_592-657_661-671_673-686_688-692_694-707_709-715

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6z0fA02	1.25.40.680	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain	0.53	35.0	3.75e-01	77.4%	74.7%
3lk5A00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.52	42.0	3.50e-01	85.5%	89.2%
6gpxB00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	38.0	3.44e-01	76.3%	78.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5028752	5067.1.1.2 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF	0.55	37.0	3.65e-01	75.3%	62.0%