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YP_009218480.1
Arc-VirNC_029011__YP_009218480.1__AVT99-gp16__00016
Identity
- Accession:
- NC_029011 ↗
- Protein ID:
- YP_009218480.1 ↗
- Kingdom:
- archaea
Quality
74.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 52-138
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5u56A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.69 | 51.0 | 4.69e-01 | 78.2% | 81.2% |
| 1zeeA01 | 1.20.58.600 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 55.0 | 5.02e-01 | 88.5% | 90.7% |
| 3qc1A01 | 1.25.40.540 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family | 0.66 | 53.0 | 4.46e-01 | 88.5% | 70.9% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.64 | 47.0 | 5.01e-01 | 80.5% | 100.0% |
| 4p3fA00 | 1.10.3450.40 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain | 0.64 | 50.0 | 3.93e-01 | 86.2% | 42.5% |
| 1iq0A03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.63 | 45.0 | 4.14e-01 | 75.9% | 75.9% |
| 7lb8B01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.63 | 45.0 | 3.05e-01 | 74.7% | 56.8% |
| 2pbeA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.62 | 47.0 | 4.20e-01 | 82.8% | 100.0% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.61 | 47.0 | 3.77e-01 | 81.6% | 75.1% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.61 | 41.0 | 4.34e-01 | 72.4% | 76.9% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.61 | 50.0 | 4.81e-01 | 95.4% | 96.1% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.59 | 44.0 | 4.57e-01 | 80.5% | 94.8% |
| 3efoB01 | 1.20.120.730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain | 0.59 | 44.0 | 3.69e-01 | 79.3% | 75.5% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.59 | 42.0 | 4.48e-01 | 78.2% | 95.9% |
| 3mesA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.59 | 41.0 | 2.88e-01 | 72.4% | 35.9% |
| 7xuxB01 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.57 | 42.0 | 3.11e-01 | 97.7% | 28.1% |
| 3l09A01 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 44.0 | 4.29e-01 | 86.2% | 88.8% |
| 1vqrD00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.56 | 41.0 | 2.95e-01 | 87.4% | 25.6% |
| 2ggfA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 43.0 | 3.80e-01 | 86.2% | 67.2% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 38.0 | 3.30e-01 | 71.3% | 62.6% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 36.0 | 3.75e-01 | 70.1% | 89.2% |
| 2zs0A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 40.0 | 3.60e-01 | 93.1% | 69.3% |
| 4l3uA00 | 1.20.1480.40 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 | 0.50 | 44.0 | 3.95e-01 | 100.0% | 90.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3191797 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 61.0 | 4.71e-01 | 90.8% | 47.9% |
| 3936843 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.72 | 54.0 | 3.62e-01 | 78.2% | 96.8% |
| 3237156 | 604.12.1.4 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 | 0.71 | 51.0 | 4.40e-01 | 75.9% | 83.0% |
| 3406152 | 109.4.1.587 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mon2_C | 0.70 | 55.0 | 4.14e-01 | 86.2% | 68.4% |
| 3926031 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.68 | 53.0 | 5.23e-01 | 86.2% | 93.7% |
| 3569625 | 604.12.1.4 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 | 0.65 | 48.0 | 4.15e-01 | 80.5% | 80.0% |
| 3390261 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.65 | 48.0 | 4.80e-01 | 79.3% | 87.8% |
| 3199872 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.64 | 47.0 | 4.49e-01 | 77.0% | 91.0% |
| 3972145 | 5069.1.1.29 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF2214 | 0.63 | 50.0 | 4.23e-01 | 85.1% | 84.1% |
| 3605318 | 109.4.1.2084 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7051 | 0.63 | 52.0 | 4.06e-01 | 92.0% | 45.1% |
| 3232756 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.62 | 52.0 | 5.32e-01 | 92.0% | 95.3% |
| 4214723 | 109.4.1.1248 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2753 | 0.62 | 50.0 | 4.41e-01 | 87.4% | 63.8% |
| 3669782 | 604.22.1.0 ↗ | alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain | 0.62 | 45.0 | 4.78e-01 | 75.9% | 88.0% |
| 4564278 | 109.4.1.923 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AEP1 | 0.61 | 50.0 | 3.36e-01 | 89.7% | 22.3% |
| 3564606 | 604.1.1.60 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Stereocilin | 0.60 | 48.0 | 3.93e-01 | 89.7% | 45.9% |
| 3781360 | 627.1.1.1 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 | 0.60 | 48.0 | 3.87e-01 | 88.5% | 54.3% |
| 4999123 | 604.12.1.135 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2 | 0.58 | 44.0 | 4.23e-01 | 82.8% | 86.7% |
| 3213253 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 41.0 | 3.25e-01 | 74.7% | 43.3% |
| 5035910 | 1030.1.1.1 ↗ | alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A | 0.57 | 41.0 | 3.62e-01 | 78.2% | 85.2% |
| 3032643 | 592.3.1.1 ↗ | alpha arrays › PWI domain-like › N-terminal domain of egg case silk protein TuSp1 › N-terminal domain of egg case silk protein TuSp1 › Spidroin_N | 0.50 | 39.0 | 3.41e-01 | 85.1% | 88.4% |