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YP_009219250.1

Arc-Vir

NC_029020__YP_009219250.1__AVU39-gp35__00035

Identity

Accession:
NC_029020 ↗
Protein ID:
YP_009219250.1 ↗
Kingdom:
archaea

Quality

80.4 mean pLDDT

Taxonomy

Bicaudaviridae› Sulfolobus_monocaudavirus_SMV2

TaxID: 1580591

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-174
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l5oA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 38.0 4.02e-01 80.8% 65.3%
6p0wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 39.0 4.33e-01 85.5% 80.0%
3lteD00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 36.0 4.21e-01 87.2% 82.1%
3nbmA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 31.0 3.83e-01 90.1% 79.8%
1jfuA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 35.0 3.51e-01 82.0% 58.0%
1ykgA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 40.0 4.27e-01 88.4% 87.0%
3fmgA01 3.40.50.11130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoprotein VP7, domain 1 0.54 38.0 4.06e-01 84.3% 83.8%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 37.0 3.52e-01 82.0% 58.0%
2mcqA01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.51 22.0 3.07e-01 80.8% 84.0%
4zkfA01 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 43.0 3.56e-01 94.2% 87.6%
1atnD00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 42.0 3.69e-01 89.0% 91.9%
3laxA00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.50 29.0 3.54e-01 79.7% 89.6%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081086 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.65 52.0 5.65e-01 95.3% 100.0%
4942367 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 33.0 4.30e-01 84.9% 86.3%
3284582 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.65 53.0 5.64e-01 95.9% 98.0%
3607096 2008.1.1.118 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RHSP 0.65 57.0 5.34e-01 95.3% 100.0%
3207085 2008.1.1.82 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RRG7 0.64 48.0 4.55e-01 90.7% 66.0%
3743329 2008.1.1.82 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RRG7 0.64 46.0 4.59e-01 91.9% 71.1%
5057130 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.63 45.0 5.15e-01 89.5% 100.0%
4936198 2008.1.1.78 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc 0.63 39.0 4.53e-01 80.2% 86.2%
3515668 7568.1.1.4 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.62 28.0 3.68e-01 89.5% 74.7%
4426395 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.61 29.0 3.73e-01 87.8% 77.0%
5053736 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 47.0 4.71e-01 94.8% 79.4%
4960131 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 54.0 4.89e-01 98.3% 90.2%
4401565 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 52.0 4.77e-01 93.0% 76.8%
3603146 2008.1.1.95 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.59 49.0 4.17e-01 89.5% 93.3%
3211115 7590.1.1.0 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.58 44.0 4.18e-01 93.0% 65.2%
4409039 2008.1.1.207 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_7 0.58 50.0 4.57e-01 91.3% 90.5%
4830344 2485.1.1.30 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Phe_hydrox_dim 0.58 39.0 3.92e-01 87.2% 66.9%
4965212 2008.1.1.233 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26226 0.56 45.0 4.68e-01 84.9% 100.0%
3466135 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 47.0 4.58e-01 92.4% 99.5%
5069139 2008.1.1.96 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RmuC 0.53 41.0 4.09e-01 89.0% 79.4%
3616334 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.53 43.0 3.89e-01 85.5% 80.9%
3288021 2008.6.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.51 41.0 4.06e-01 84.3% 95.0%
4030512 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.51 40.0 3.77e-01 87.2% 67.1%
3740184 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 33.0 3.54e-01 76.7% 75.2%
3745001 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.51 44.0 3.56e-01 94.2% 85.8%
1106826 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.50 22.0 3.04e-01 80.8% 84.4%