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NC_029024.1__YP_009219608.1__AVT71_gp34__00034

Bact-Vir

NC_029024.1__YP_009219608.1__AVT71_gp34__00034

Identity

Accession:
NC_029024 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-88
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17209.10 best Hfq 40.3 2.50e-10 77.8% 95.3%
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.96 68.0 7.60e-01 72.8% 89.4%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.96 66.0 7.63e-01 72.8% 95.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.95 73.0 8.07e-01 84.0% 97.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.90 59.0 6.86e-01 71.6% 91.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.88 58.0 5.33e-01 75.3% 53.9%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.86 62.0 6.45e-01 74.1% 90.5%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.86 61.0 6.64e-01 72.8% 100.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.85 62.0 6.05e-01 75.3% 77.9%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.84 60.0 6.35e-01 74.1% 95.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.84 58.0 6.61e-01 71.6% 100.0%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.83 61.0 6.62e-01 76.5% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.82 60.0 6.02e-01 76.5% 79.5%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.82 56.0 6.33e-01 70.4% 93.5%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.82 58.0 5.56e-01 74.1% 79.6%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.82 63.0 6.77e-01 81.5% 97.2%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 59.0 6.10e-01 75.3% 94.7%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 57.0 6.31e-01 72.8% 100.0%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 65.0 5.93e-01 85.2% 78.1%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.31e-01 74.1% 82.1%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.87e-01 74.1% 100.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 46.0 5.61e-01 70.4% 100.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 53.0 5.40e-01 75.3% 97.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 49.0 5.28e-01 84.0% 81.2%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.71 47.0 4.37e-01 71.6% 54.5%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.70 45.0 4.08e-01 72.8% 46.9%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 5.33e-01 70.4% 100.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 5.02e-01 72.8% 80.3%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.69 47.0 5.19e-01 79.0% 86.4%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.69 54.0 4.22e-01 84.0% 66.3%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.69 49.0 5.03e-01 74.1% 96.1%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 48.0 4.18e-01 74.1% 48.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 4.86e-01 70.4% 84.1%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 5.16e-01 70.4% 96.4%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 48.0 4.93e-01 74.1% 96.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.69e-01 75.3% 78.1%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.66 46.0 4.15e-01 72.8% 59.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.69e-01 71.6% 84.4%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.65 53.0 4.96e-01 87.7% 75.5%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 44.0 3.87e-01 74.1% 50.4%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 3.71e-01 76.5% 67.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.23e-01 82.7% 90.6%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.57 40.0 4.03e-01 74.1% 100.0%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 41.0 3.88e-01 75.3% 79.2%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 44.0 3.94e-01 87.7% 78.4%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.56 40.0 3.88e-01 76.5% 100.0%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.55 39.0 3.54e-01 74.1% 64.3%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.55 38.0 2.93e-01 72.8% 86.7%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 37.0 4.19e-01 72.8% 100.0%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 37.0 4.13e-01 70.4% 100.0%
3ip3A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 48.0 3.61e-01 100.0% 95.6%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 3.39e-01 84.0% 94.2%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 41.0 3.66e-01 86.4% 92.7%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.53 36.0 3.75e-01 71.6% 79.2%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 38.0 3.65e-01 76.5% 77.7%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.52 37.0 3.06e-01 74.1% 76.7%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 40.0 3.51e-01 100.0% 54.3%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 36.0 3.34e-01 74.1% 71.2%
ECOD (89)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
135648 4.1.1.142 beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.97 69.0 7.71e-01 72.8% 92.3%
1263519 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.96 68.0 7.84e-01 74.1% 95.2%
4658938 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.94 74.0 7.08e-01 85.2% 73.3%
4269844 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.94 66.0 7.13e-01 72.8% 90.0%
4123180 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.93 74.0 7.68e-01 88.9% 88.0%
4662294 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.93 62.0 7.48e-01 70.4% 100.0%
5045214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.93 68.0 7.27e-01 75.3% 97.1%
4656461 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.93 62.0 7.20e-01 71.6% 93.3%
4451993 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.92 64.0 7.40e-01 74.1% 96.7%
3839016 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.91 65.0 7.19e-01 74.1% 90.8%
4293453 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.91 65.0 6.61e-01 74.1% 81.2%
4084850 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.91 64.0 7.18e-01 72.8% 93.8%
4163851 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.90 61.0 7.02e-01 71.6% 93.3%
4499953 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.90 63.0 7.23e-01 74.1% 96.7%
5074749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.90 70.0 7.51e-01 80.2% 95.7%
4359892 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.90 77.0 7.77e-01 98.8% 90.0%
4226934 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.90 63.0 6.99e-01 71.6% 92.3%
5004476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.90 62.0 6.86e-01 75.3% 87.7%
1482194 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.90 59.0 6.86e-01 71.6% 91.7%
4400642 4.1.1.257 beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.90 63.0 6.23e-01 72.8% 70.6%
4432348 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.89 62.0 6.77e-01 74.1% 85.3%
4555816 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.89 64.0 6.30e-01 74.1% 81.2%
5001903 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.89 62.0 6.66e-01 74.1% 82.9%
4660084 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.89 64.0 6.93e-01 74.1% 89.9%
4220126 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.89 64.0 6.27e-01 74.1% 81.2%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.89 64.0 7.08e-01 74.1% 92.3%
4185009 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.89 64.0 7.08e-01 74.1% 95.4%
4429329 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.88 62.0 6.94e-01 72.8% 93.8%
4985969 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 60.0 6.98e-01 74.1% 95.0%
4104821 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.88 63.0 6.58e-01 74.1% 82.7%
139950 4.1.1.126 beta barrels › SH3 › SH3 › SH3 › DUF5608 0.88 58.0 6.88e-01 75.3% 98.2%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.88 63.0 6.82e-01 74.1% 89.9%
4940673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 61.0 7.07e-01 72.8% 96.7%
4073433 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.88 64.0 6.47e-01 75.3% 91.3%
4941512 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 65.0 7.03e-01 85.2% 90.0%
5013683 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 61.0 6.98e-01 76.5% 96.7%
4124780 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.87 62.0 6.58e-01 74.1% 84.9%
4342110 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.87 63.0 6.69e-01 75.3% 86.3%
4347922 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.87 60.0 6.97e-01 71.6% 100.0%
4332042 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 61.0 6.58e-01 75.3% 84.3%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.87 62.0 6.89e-01 74.1% 95.4%
4216845 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.87 63.0 6.65e-01 75.3% 86.3%
4973749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 60.0 6.46e-01 74.1% 82.9%
4261362 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.87 63.0 6.78e-01 75.3% 90.0%
4953054 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 60.0 6.26e-01 74.1% 77.3%
4975764 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.86 61.0 6.52e-01 74.1% 84.3%
5036621 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 57.0 6.85e-01 72.8% 100.0%
4264671 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.86 62.0 6.25e-01 74.1% 78.8%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.86 62.0 6.63e-01 74.1% 90.0%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.86 61.0 6.79e-01 74.1% 95.4%
4342488 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 57.0 6.43e-01 72.8% 88.9%
4396355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.85 61.0 6.03e-01 74.1% 81.2%
4118226 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 61.0 6.54e-01 74.1% 88.6%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 66.0 4.22e-01 80.2% 20.0%
4286562 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.85 61.0 6.74e-01 74.1% 95.4%
4212091 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.85 61.0 6.72e-01 74.1% 95.4%
4299932 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.85 61.0 6.71e-01 74.1% 95.4%
4088209 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.85 60.0 6.71e-01 74.1% 95.4%
4069793 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.85 60.0 6.48e-01 74.1% 88.6%
4974211 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.84 58.0 6.73e-01 71.6% 98.3%
4584943 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.84 61.0 6.55e-01 75.3% 90.0%
3036710 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 60.0 6.71e-01 74.1% 96.8%
4149821 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 58.0 6.69e-01 74.1% 96.7%
4151014 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.83 56.0 6.42e-01 75.3% 95.0%
4957350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 58.0 6.42e-01 74.1% 90.8%
139951 4.1.1.125 beta barrels › SH3 › SH3 › SH3 › DUF5607 0.79 49.0 5.95e-01 71.6% 96.2%
4936291 4.1.1.487 beta barrels › SH3 › SH3 › SH3 › DUF7205 0.79 56.0 6.16e-01 72.8% 92.3%
4029082 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 47.0 5.75e-01 71.6% 100.0%
4646501 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 66.0 5.24e-01 98.8% 48.4%
3420348 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.74 48.0 5.66e-01 72.8% 98.2%
3821919 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.74 49.0 5.56e-01 76.5% 91.7%
4525683 4.11.1.3 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.74 48.0 4.20e-01 72.8% 44.9%
3570399 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 51.0 5.62e-01 72.8% 100.0%
3590784 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.72 45.0 4.92e-01 71.6% 78.5%
3586487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 46.0 4.57e-01 71.6% 62.4%
4385345 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 44.0 5.31e-01 70.4% 100.0%
4000280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 46.0 5.39e-01 72.8% 100.0%
4009281 219.1.1.65 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.70 49.0 4.53e-01 74.1% 58.1%
224033 219.1.1.65 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.68 48.0 4.29e-01 74.1% 51.7%
3218198 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 43.0 5.02e-01 70.4% 94.5%
3852545 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 46.0 5.15e-01 75.3% 95.0%
5057445 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.67 56.0 5.51e-01 92.6% 84.7%
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 45.0 4.99e-01 75.3% 87.7%
3996278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.38e-01 79.0% 64.2%
4954284 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 45.0 5.08e-01 71.6% 98.3%
3710823 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 40.0 4.84e-01 70.4% 100.0%
3484822 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.64 47.0 4.81e-01 77.8% 78.8%
4977702 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.64 55.0 5.42e-01 92.6% 91.8%
4947175 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.63 55.0 5.28e-01 92.6% 87.8%