←Back to structures

YP_009219903.1

Arc-Vir

NC_029027__YP_009219903.1__AVT98-gp04__00004

Identity

Accession:
NC_029027 ↗
Protein ID:
YP_009219903.1 ↗
Kingdom:
archaea

Quality

83.4 mean pLDDT

Taxonomy

Sulfolobales_virus_YNP1

TaxID: 1732179

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-36_38-122
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 47.0 3.27e-01 80.9% 73.7%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 49.0 3.32e-01 87.2% 73.1%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 48.0 3.26e-01 85.1% 55.3%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.59 47.0 3.75e-01 100.0% 44.0%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 48.0 3.33e-01 89.4% 57.6%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 39.0 4.21e-01 89.4% 84.2%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 47.0 4.43e-01 90.4% 93.2%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 46.0 4.25e-01 89.4% 95.1%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 47.0 4.16e-01 88.3% 67.2%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.55 46.0 4.02e-01 96.8% 90.9%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.55 46.0 4.09e-01 96.8% 95.8%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.53 35.0 3.24e-01 97.9% 50.8%
4zn4A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 40.0 2.66e-01 80.9% 39.9%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 44.0 3.77e-01 92.6% 91.0%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 46.0 3.36e-01 97.9% 73.3%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 39.0 3.18e-01 88.3% 40.8%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.80e-01 90.4% 89.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075528 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.71 43.0 4.43e-01 91.5% 63.3%
5071733 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.66 44.0 4.50e-01 90.4% 70.0%
3514681 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.65 41.0 5.05e-01 91.5% 100.0%
4528719 4.1.1.438 ↗ beta barrels › SH3 › SH3 › SH3 › PF27440 0.64 40.0 4.67e-01 90.4% 92.3%
3788120 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 46.0 3.12e-01 75.5% 75.6%
5032877 5.1.4.665 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_2 0.63 48.0 3.17e-01 80.9% 71.9%
3717146 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 49.0 3.11e-01 84.0% 38.2%
3619496 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 45.0 2.98e-01 76.6% 51.3%
3275791 295.1.1.31 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF30059 0.60 44.0 4.01e-01 96.8% 57.7%
3228525 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.59 45.0 4.28e-01 100.0% 69.1%
1954221 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.59 41.0 4.48e-01 88.3% 90.7%
3851160 5.1.5.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Frtz 0.58 46.0 2.85e-01 86.2% 36.0%
3763123 5.1.4.371 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Frtz 0.58 46.0 3.01e-01 86.2% 48.8%
3938164 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 38.0 4.31e-01 86.2% 96.9%
3488069 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.23e-01 96.8% 42.1%
3347329 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.56 40.0 4.00e-01 91.5% 71.0%
3721174 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.55 47.0 4.19e-01 96.8% 90.0%
5021438 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 34.0 3.34e-01 90.4% 57.0%
3781393 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 41.0 4.32e-01 100.0% 89.3%
3864913 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.53 43.0 3.73e-01 89.4% 83.9%
4946845 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 42.0 3.08e-01 84.0% 37.8%
3413325 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 3.10e-01 97.9% 34.5%
3940149 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 37.0 3.82e-01 96.8% 76.7%
4156379 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.53 41.0 3.46e-01 84.0% 76.4%
3598341 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 3.05e-01 92.6% 27.2%
3185222 868.1.1.4 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › VTC 0.53 42.0 2.95e-01 85.1% 54.7%
3734383 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.52 45.0 3.07e-01 97.9% 34.4%
3702308 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 40.0 2.63e-01 84.0% 30.7%
3582843 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 2.73e-01 96.8% 73.6%
3708351 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 46.0 3.19e-01 100.0% 38.5%
4968485 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.51 38.0 2.69e-01 80.9% 33.4%
None — 0.51 46.0 3.02e-01 100.0% 29.9%
5037155 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.94e-01 100.0% 37.2%
3399261 5.1.4.371 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Frtz 0.51 45.0 2.89e-01 98.9% 28.0%
146266 295.1.1.8 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 0.51 35.0 3.68e-01 90.4% 79.8%