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YP_009219929.1
Arc-VirNC_029027__YP_009219929.1__AVT98-gp30__00030
Identity
- Accession:
- NC_029027 ↗
- Protein ID:
- YP_009219929.1 ↗
- Kingdom:
- archaea
Quality
75.9
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-37_39-62_64-112
Domain cluster:
rep: IMGVR_UViG_3300006180_000002-3300006180-Ga0079045_10000106__D2-108
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.59 | 33.0 | 3.97e-01 | 78.9% | 83.1% |
| 1whvA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 37.0 | 3.90e-01 | 93.6% | 78.0% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 32.0 | 3.40e-01 | 77.1% | 65.7% |
| 2cpdA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 35.0 | 4.05e-01 | 86.2% | 98.7% |
| 6e4nA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 34.0 | 3.96e-01 | 81.7% | 100.0% |
| 2mkhA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 38.0 | 3.96e-01 | 83.5% | 84.5% |
| 4k4kA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 41.0 | 3.96e-01 | 86.2% | 100.0% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 34.0 | 3.83e-01 | 83.5% | 92.5% |
| 2gmhA02 | 3.30.9.90 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.52 | 37.0 | 3.04e-01 | 80.7% | 39.9% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 32.0 | 3.48e-01 | 76.1% | 74.4% |
| 4gl8A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 38.0 | 3.46e-01 | 79.8% | 100.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036691 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.62 | 35.0 | 3.98e-01 | 88.1% | 73.8% |
| 4344485 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.62 | 33.0 | 3.73e-01 | 85.3% | 65.9% |
| 5052581 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.61 | 35.0 | 3.84e-01 | 87.2% | 70.6% |
| 4966680 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.60 | 34.0 | 4.17e-01 | 85.3% | 90.8% |
| 4021656 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.59 | 34.0 | 3.76e-01 | 89.0% | 69.3% |
| 3308472 | 304.9.1.102 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_NFXL1 | 0.58 | 36.0 | 4.03e-01 | 88.1% | 82.5% |
| 4028000 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 37.0 | 4.10e-01 | 89.0% | 92.5% |
| 4099275 | 304.37.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 | 0.55 | 33.0 | 3.84e-01 | 80.7% | 86.7% |
| 4941135 | 314.1.1.1 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 | 0.54 | 38.0 | 2.84e-01 | 74.3% | 87.6% |
| 4946739 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.54 | 26.0 | 3.26e-01 | 84.4% | 75.4% |
| 3597179 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 34.0 | 3.75e-01 | 83.5% | 81.2% |
| 3588071 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 40.0 | 3.58e-01 | 80.7% | 87.5% |
| 4109165 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.53 | 40.0 | 3.90e-01 | 78.9% | 99.2% |
| 3604130 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 33.0 | 3.69e-01 | 77.1% | 81.2% |
| 3456494 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 38.0 | 4.15e-01 | 91.7% | 97.6% |
| 3603227 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.50 | 34.0 | 3.80e-01 | 84.4% | 100.0% |