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YP_009219931.1
Arc-VirNC_029027__YP_009219931.1__AVT98-gp32__00032
Identity
- Accession:
- NC_029027 ↗
- Protein ID:
- YP_009219931.1 ↗
- Kingdom:
- archaea
Quality
51.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-179
Domain cluster:
rep: IMGVR_UViG_3300025156_000428-3300025156-Ga0209834_1000016618__D251-401
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.71 | 51.0 | 5.56e-01 | 99.2% | 88.0% |
| 2id1A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.70 | 49.0 | 5.41e-01 | 99.2% | 89.4% |
| 2o5aA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.69 | 47.0 | 5.29e-01 | 100.0% | 89.2% |
| 4wcwA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.68 | 48.0 | 5.21e-01 | 100.0% | 85.6% |
| 3b0xA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 44.0 | 4.87e-01 | 100.0% | 84.8% |
| 6ulxA01 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.64 | 37.0 | 4.30e-01 | 96.2% | 80.4% |
| 6d0aA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 33.0 | 3.48e-01 | 76.9% | 55.7% |
| 2dhmA01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.59 | 38.0 | 4.46e-01 | 96.2% | 93.3% |
| 4r0mA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.59 | 38.0 | 4.13e-01 | 100.0% | 78.7% |
| 1u9dA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.58 | 39.0 | 4.07e-01 | 98.5% | 73.0% |
| 2bcqA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.58 | 46.0 | 4.79e-01 | 100.0% | 91.1% |
| 2x3lA01 | 3.90.1150.150 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.57 | 31.0 | 3.41e-01 | 90.0% | 63.8% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 29.0 | 3.60e-01 | 96.9% | 80.8% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.54 | 40.0 | 2.95e-01 | 95.4% | 29.8% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.54 | 41.0 | 2.99e-01 | 96.9% | 30.1% |
| 4ud8B01 | 3.30.43.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | 0.53 | 42.0 | 4.51e-01 | 96.9% | 100.0% |
| 2bjoA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 36.0 | 4.16e-01 | 96.9% | 98.9% |
| 7x4qA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 46.0 | 4.42e-01 | 100.0% | 88.1% |
| 2jraA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.50 | 16.0 | 2.58e-01 | 95.4% | 76.2% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4096725 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.72 | 51.0 | 5.46e-01 | 100.0% | 82.6% |
| 2742477 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.71 | 48.0 | 5.28e-01 | 96.9% | 84.0% |
| 3970660 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.71 | 50.0 | 5.29e-01 | 99.2% | 81.7% |
| 3947896 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.70 | 49.0 | 5.41e-01 | 99.2% | 89.5% |
| 2757075 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.68 | 48.0 | 4.80e-01 | 96.9% | 70.7% |
| 4053985 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.67 | 52.0 | 5.03e-01 | 98.5% | 71.7% |
| 3213519 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.67 | 50.0 | 5.09e-01 | 100.0% | 78.5% |
| 4344900 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.66 | 51.0 | 5.15e-01 | 98.5% | 79.2% |
| 5027537 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.65 | 42.0 | 4.20e-01 | 97.7% | 63.8% |
| 4442778 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.64 | 53.0 | 5.09e-01 | 100.0% | 76.6% |
| 5046968 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.64 | 46.0 | 4.56e-01 | 99.2% | 71.1% |
| 5078678 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.63 | 41.0 | 4.53e-01 | 99.2% | 81.0% |
| 4982584 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.63 | 44.0 | 4.36e-01 | 96.9% | 68.1% |
| 3476874 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.63 | 46.0 | 4.83e-01 | 100.0% | 82.5% |
| 5078640 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.63 | 38.0 | 4.29e-01 | 97.7% | 79.0% |
| 3318424 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.62 | 46.0 | 4.69e-01 | 99.2% | 78.5% |
| 4934691 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.61 | 38.0 | 4.31e-01 | 100.0% | 81.0% |
| 5013444 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.61 | 40.0 | 4.21e-01 | 100.0% | 72.5% |
| 3272557 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 47.0 | 4.24e-01 | 100.0% | 60.6% |
| 4992179 | 327.11.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 | 0.58 | 36.0 | 4.33e-01 | 96.9% | 94.1% |
| 4996818 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.58 | 43.0 | 4.25e-01 | 100.0% | 73.3% |
| 4935 | 315.1.1.4 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › DUF1904 | 0.58 | 39.0 | 4.07e-01 | 98.5% | 73.0% |
| 5009605 | 327.5.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 | 0.57 | 36.0 | 4.06e-01 | 100.0% | 85.3% |
| 4998156 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.57 | 41.0 | 3.91e-01 | 99.2% | 63.2% |
| 5022991 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.56 | 32.0 | 3.74e-01 | 83.8% | 81.1% |
| 4121829 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.55 | 51.0 | 4.76e-01 | 97.7% | 83.2% |
| 4169675 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.55 | 50.0 | 4.64e-01 | 98.5% | 79.4% |
| 4069049 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.55 | 51.0 | 4.28e-01 | 100.0% | 77.1% |
| 4310577 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.55 | 50.0 | 4.44e-01 | 98.5% | 76.7% |
| 4130110 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.54 | 50.0 | 4.63e-01 | 99.2% | 81.2% |
| 3282580 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.54 | 39.0 | 4.18e-01 | 92.3% | 85.2% |
| 2320168 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.53 | 38.0 | 4.01e-01 | 100.0% | 83.5% |
| 4031765 | 3535.1.1.1 ↗ | a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS | 0.53 | 40.0 | 4.23e-01 | 100.0% | 87.4% |
| 3605008 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.53 | 49.0 | 4.14e-01 | 100.0% | 81.6% |
| 3223920 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 22.0 | 2.84e-01 | 79.2% | 66.7% |
| 3299630 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.52 | 35.0 | 3.91e-01 | 79.2% | 85.7% |
| 3274698 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.52 | 46.0 | 3.79e-01 | 97.7% | 69.6% |
| 3273326 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.51 | 46.0 | 3.69e-01 | 100.0% | 54.2% |
| 5042295 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.51 | 29.0 | 3.41e-01 | 84.6% | 80.0% |
| 4956650 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.51 | 31.0 | 3.49e-01 | 86.9% | 79.0% |
D2
medium
residues 222-400
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h3mA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.57 | 23.0 | 3.33e-01 | 78.8% | 78.7% |
| 1zeeA01 | 1.20.58.600 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 27.0 | 3.30e-01 | 88.8% | 77.1% |