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YP_009219939.1

Arc-Vir

NC_029027__YP_009219939.1__AVT98-gp40__00040

Identity

Accession:
NC_029027 ↗
Protein ID:
YP_009219939.1 ↗
Kingdom:
archaea

Quality

84.3 mean pLDDT

Taxonomy

Sulfolobales_virus_YNP1

TaxID: 1732179

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-101
PDB
Domain cluster: rep: MK064564__AZI75839.1__SBFV3-gp04__00004__D1-99
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8E02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.65 36.0 3.80e-01 74.3% 59.1%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 48.0 4.16e-01 84.2% 95.1%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 44.0 4.31e-01 74.3% 88.0%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 46.0 4.23e-01 86.1% 91.3%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 40.0 3.62e-01 70.3% 65.2%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.57 44.0 4.04e-01 81.2% 86.4%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 42.0 2.95e-01 77.2% 92.1%
2n93A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 4.09e-01 86.1% 93.1%
4rnyA03 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.55 40.0 3.68e-01 74.3% 93.8%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.99e-01 85.1% 95.6%
1a2vA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.55 45.0 2.97e-01 89.1% 78.1%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.54 46.0 3.99e-01 94.1% 69.3%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.54 36.0 3.70e-01 70.3% 71.1%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 47.0 4.16e-01 97.0% 81.9%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.54 37.0 3.90e-01 70.3% 93.2%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 41.0 3.86e-01 82.2% 93.8%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 40.0 3.20e-01 79.2% 69.6%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 41.0 3.91e-01 86.1% 95.2%
7jjtA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 36.0 3.86e-01 71.3% 94.3%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.51 43.0 3.75e-01 99.0% 58.4%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.51 45.0 3.91e-01 97.0% 81.2%
2ovsA00 2.40.128.380 Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR 0.51 35.0 3.41e-01 73.3% 80.5%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.50 39.0 3.26e-01 84.2% 75.0%
4joxA00 2.60.270.50 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.50 39.0 3.71e-01 83.2% 85.6%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 35.0 3.61e-01 71.3% 91.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947101 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.63 36.0 3.71e-01 75.2% 58.9%
3925021 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.62 49.0 4.46e-01 85.1% 91.1%
4935086 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.61 47.0 4.06e-01 81.2% 67.7%
5044087 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.60 46.0 4.01e-01 81.2% 70.0%
4949965 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.59 45.0 3.93e-01 81.2% 68.4%
3239519 4099.1.1.29 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29306 0.58 42.0 3.78e-01 76.2% 82.8%
3882607 11.1.1.860 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CLSTN_C 0.58 42.0 2.62e-01 76.2% 22.3%
4132501 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.57 46.0 2.63e-01 88.1% 44.0%
3760199 331.2.1.6 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › Med14_RM8 0.57 40.0 4.08e-01 73.3% 78.0%
4944450 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.57 43.0 3.72e-01 81.2% 95.6%
4979196 241.1.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.55 36.0 3.41e-01 88.1% 54.4%
3601303 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 3.20e-01 99.0% 93.8%
3619927 9.2.1.6 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7042 0.52 47.0 4.51e-01 99.0% 87.0%
3521811 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 39.0 3.24e-01 78.2% 76.0%
5035423 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 37.0 4.06e-01 82.2% 89.4%
3540014 243.1.1.40 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.52 36.0 3.37e-01 77.2% 56.9%
3962450 9.27.1.0 ↗ beta barrels › Lipocalins/Streptavidin › LpqH › LpqH 0.51 42.0 4.20e-01 88.1% 98.1%
3481105 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 41.0 2.99e-01 88.1% 42.3%
4001579 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 44.0 4.28e-01 98.0% 90.4%
3252404 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.51 39.0 4.07e-01 83.2% 86.3%
3953943 9.27.1.1 ↗ beta barrels › Lipocalins/Streptavidin › LpqH › LpqH › Myco_19_kDa 0.50 42.0 4.07e-01 89.1% 94.5%