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NC_029029.1__YP_009220090.1__AVV45_gp33__00033

Bact-Vir

NC_029029.1__YP_009220090.1__AVV45_gp33__00033

Identity

Accession:
NC_029029 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Abouovirus› Brevibacillus_phage_Abouo

TaxID: 1296661

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-43
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xf5B00 1.10.10.1530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.98 92.0 8.38e-01 100.0% 80.0%
2etjA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.70 58.0 3.72e-01 100.0% 69.0%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 5.22e-01 100.0% 97.8%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.66 53.0 4.16e-01 100.0% 51.0%
2kxeA00 1.10.8.800 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › D-family DNA polymerase, DP1 subunit N-terminal domain 0.64 44.0 3.70e-01 72.5% 45.8%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.64 43.0 3.91e-01 72.5% 48.3%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.39e-01 100.0% 72.6%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.63 51.0 4.32e-01 97.5% 58.7%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 47.0 3.37e-01 92.5% 79.9%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 48.0 4.30e-01 100.0% 62.7%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.61 48.0 3.85e-01 97.5% 48.9%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.61 49.0 4.40e-01 97.5% 68.3%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.60 45.0 3.15e-01 100.0% 89.3%
2cw7A04 1.10.8.1330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Intein homing endonuclease, domain III 0.58 43.0 4.01e-01 92.5% 62.3%
4h0pB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 45.0 2.92e-01 95.0% 87.2%
2feaA02 3.90.1470.20 Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › 0.57 43.0 3.35e-01 87.5% 49.0%
3gfaA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.55 47.0 3.06e-01 100.0% 67.9%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 43.0 3.74e-01 97.5% 82.4%
4ezeB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 44.0 2.69e-01 100.0% 54.0%
6dv2G02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 44.0 2.93e-01 100.0% 38.6%
2daeA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.50 35.0 2.98e-01 75.0% 57.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
397561 3151.1.1.1 ↗ alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1_GP23-1 0.98 92.0 8.38e-01 100.0% 80.0%
3588564 3151.1.1.2 ↗ alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › Phage_XkdX 0.94 82.0 8.23e-01 95.0% 95.0%
4032841 3151.1.1.2 ↗ alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › Phage_XkdX 0.94 84.0 8.08e-01 97.5% 88.9%
5002758 4030.1.1.0 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.77 64.0 5.61e-01 92.5% 78.3%
4986013 4994.1.1.0 ↗ alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like 0.77 67.0 5.26e-01 100.0% 78.8%
4381851 3151.1.1.2 ↗ alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 › Phage_XkdX 0.75 64.0 6.17e-01 97.5% 91.1%
3174801 6051.7.1.0 ↗ alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 4 C-terminal docking domain › Class 4 C-terminal docking domain 0.74 51.0 5.62e-01 70.0% 96.7%
3818805 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.70 57.0 5.02e-01 100.0% 70.8%
4167193 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.68 54.0 5.37e-01 100.0% 97.8%
4571180 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.68 56.0 5.17e-01 100.0% 89.1%
3847014 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.68 53.0 4.03e-01 100.0% 81.7%
3186807 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.67 54.0 4.25e-01 97.5% 46.3%
3280977 129.1.1.16 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 0.66 51.0 3.83e-01 100.0% 37.6%
3740448 101.1.10.33 ↗ alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C 0.62 51.0 4.18e-01 100.0% 49.4%
3926165 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.54 36.0 3.60e-01 72.5% 64.4%
3870636 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.65e-01 95.0% 86.2%